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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 45686 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • The sequence is converted from residues with experimentally determined coordinates in the structure; residues not observed in the 3D structure are excluded.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (resolution)     		Site
    #     		DNA
    sequence         		EC
    number     		GO
    terms     		UniProt PubMed Binding
    affinity
    2701 1u0d:B
    (2.9)    		 BS01 >1u0d:C
    gcgaaacgtcgtgagacagttccg
    		 3.1.-.- GO:0004519 ... P05725 15313605 PDBbind: Kd=2.0nM
    2702 1u0d:B
    (2.9)    		 BS02 >1u0d:D
    cggaactgtctcacgacgtttcgc
    		 3.1.-.- GO:0004519 ... P05725 15313605 PDBbind: Kd=2.0nM
    2703 1u1k:A
    (2.0)    		 BS01 >1u1k:B (identical to 9gpj:B, 8hni:N, 8hni:O, 8hni:P, 8hni:Q, 8hni:R, 8hni:S, 8hni:T, 8hni:U, 8hni:V, 8hni:W, 8hni:X, 8rzv:B, 1u1l:B, 1u1m:B, 1u1o:B, 1u1p:B, 1u1q:B, 1u1r:B, 2up1:B)
    tagggttaggg
    		 ? GO:0003676 ... P09651 15342234 PDBbind: Kd=319nM
    2704 1u1l:A
    (2.0)    		 BS01 >1u1l:B (identical to 9gpj:B, 8hni:N, 8hni:O, 8hni:P, 8hni:Q, 8hni:R, 8hni:S, 8hni:T, 8hni:U, 8hni:V, 8hni:W, 8hni:X, 8rzv:B, 1u1k:B, 1u1m:B, 1u1o:B, 1u1p:B, 1u1q:B, 1u1r:B, 2up1:B)
    tagggttaggg
    		 ? GO:0003676 ... P09651 15342234 PDBbind: Kd=107nM
    2705 1u1m:A
    (2.0)    		 BS01 >1u1m:B (identical to 9gpj:B, 8hni:N, 8hni:O, 8hni:P, 8hni:Q, 8hni:R, 8hni:S, 8hni:T, 8hni:U, 8hni:V, 8hni:W, 8hni:X, 8rzv:B, 1u1k:B, 1u1l:B, 1u1o:B, 1u1p:B, 1u1q:B, 1u1r:B, 2up1:B)
    tagggttaggg
    		 ? GO:0003676 ... P09651 15342234 PDBbind: Kd=296nM
    2706 1u1n:A
    (2.1)    		 BS01 >1u1n:B
    tagggttaagg
    		 ? GO:0003676 ... P09651 15342234 PDBbind: Kd=316nM
    2707 1u1o:A
    (2.0)    		 BS01 >1u1o:B (identical to 9gpj:B, 8hni:N, 8hni:O, 8hni:P, 8hni:Q, 8hni:R, 8hni:S, 8hni:T, 8hni:U, 8hni:V, 8hni:W, 8hni:X, 8rzv:B, 1u1k:B, 1u1l:B, 1u1m:B, 1u1p:B, 1u1q:B, 1u1r:B, 2up1:B)
    tagggttaggg
    		 ? GO:0003676 ... P09651 15342234 PDBbind: Kd=59nM
    2708 1u1p:A
    (1.9)    		 BS01 >1u1p:B (identical to 9gpj:B, 8hni:N, 8hni:O, 8hni:P, 8hni:Q, 8hni:R, 8hni:S, 8hni:T, 8hni:U, 8hni:V, 8hni:W, 8hni:X, 8rzv:B, 1u1k:B, 1u1l:B, 1u1m:B, 1u1o:B, 1u1q:B, 1u1r:B, 2up1:B)
    tagggttaggg
    		 ? GO:0003676 ... P09651 15342234 PDBbind: Kd=209nM
    2709 1u1q:A
    (1.8)    		 BS01 >1u1q:B (identical to 9gpj:B, 8hni:N, 8hni:O, 8hni:P, 8hni:Q, 8hni:R, 8hni:S, 8hni:T, 8hni:U, 8hni:V, 8hni:W, 8hni:X, 8rzv:B, 1u1k:B, 1u1l:B, 1u1m:B, 1u1o:B, 1u1p:B, 1u1r:B, 2up1:B)
    tagggttaggg
    		 ? GO:0003676 ... P09651 15342234 PDBbind: Kd=76nM
    2710 1u1r:A
    (1.8)    		 BS01 >1u1r:B (identical to 9gpj:B, 8hni:N, 8hni:O, 8hni:P, 8hni:Q, 8hni:R, 8hni:S, 8hni:T, 8hni:U, 8hni:V, 8hni:W, 8hni:X, 8rzv:B, 1u1k:B, 1u1l:B, 1u1m:B, 1u1o:B, 1u1p:B, 1u1q:B, 2up1:B)
    tagggttaggg
    		 ? GO:0003676 ... P09651 15342234 PDBbind: Kd=229nM
    2711 1u35:A
    (3.0)    		 BS01 >1u35:I (identical to 2f8n:I)
    atcaatatccacctgcagattctaccaaaagtgtatttggaaactgctcc
atcaaaaggcatgttcagcggaatccgctgaacatgccttttgatggagc
agtttccaaatacacttttggtagaatctgcaggtggatattgat
    		 ? GO:0000786 ... P68433 16107708
    2712 1u35:A
    (3.0)    		 BS02 >1u35:J (identical to 2f8n:J)
    atcaatatccacctgcagattctaccaaaagtgtatttggaaactgctcc
atcaaaaggcatgttcagcggattccgctgaacatgccttttgatggagc
agtttccaaatacacttttggtagaatctgcaggtggatattgat
    		 ? GO:0000786 ... P68433 16107708
    2713 1u35:B
    (3.0)    		 BS01 >1u35:I (identical to 2f8n:I)
    atcaatatccacctgcagattctaccaaaagtgtatttggaaactgctcc
atcaaaaggcatgttcagcggaatccgctgaacatgccttttgatggagc
agtttccaaatacacttttggtagaatctgcaggtggatattgat
    		 ? GO:0000786 ... P62806 16107708
    2714 1u35:B
    (3.0)    		 BS02 >1u35:J (identical to 2f8n:J)
    atcaatatccacctgcagattctaccaaaagtgtatttggaaactgctcc
atcaaaaggcatgttcagcggattccgctgaacatgccttttgatggagc
agtttccaaatacacttttggtagaatctgcaggtggatattgat
    		 ? GO:0000786 ... P62806 16107708
    2715 1u35:C
    (3.0)    		 BS01 >1u35:I (identical to 2f8n:I)
    atcaatatccacctgcagattctaccaaaagtgtatttggaaactgctcc
atcaaaaggcatgttcagcggaatccgctgaacatgccttttgatggagc
agtttccaaatacacttttggtagaatctgcaggtggatattgat
    		 ? GO:0000786 ... O75367 16107708
    2716 1u35:C
    (3.0)    		 BS02 >1u35:J (identical to 2f8n:J)
    atcaatatccacctgcagattctaccaaaagtgtatttggaaactgctcc
atcaaaaggcatgttcagcggattccgctgaacatgccttttgatggagc
agtttccaaatacacttttggtagaatctgcaggtggatattgat
    		 ? GO:0000786 ... O75367 16107708
    2717 1u35:D
    (3.0)    		 BS01 >1u35:I (identical to 2f8n:I)
    atcaatatccacctgcagattctaccaaaagtgtatttggaaactgctcc
atcaaaaggcatgttcagcggaatccgctgaacatgccttttgatggagc
agtttccaaatacacttttggtagaatctgcaggtggatattgat
    		 ? GO:0000786 ... Q9D2U9 16107708
    2718 1u35:D
    (3.0)    		 BS02 >1u35:J (identical to 2f8n:J)
    atcaatatccacctgcagattctaccaaaagtgtatttggaaactgctcc
atcaaaaggcatgttcagcggattccgctgaacatgccttttgatggagc
agtttccaaatacacttttggtagaatctgcaggtggatattgat
    		 ? GO:0000786 ... Q9D2U9 16107708
    2719 1u35:E
    (3.0)    		 BS01 >1u35:I (identical to 2f8n:I)
    atcaatatccacctgcagattctaccaaaagtgtatttggaaactgctcc
atcaaaaggcatgttcagcggaatccgctgaacatgccttttgatggagc
agtttccaaatacacttttggtagaatctgcaggtggatattgat
    		 ? GO:0000786 ... P68433 16107708
    2720 1u35:E
    (3.0)    		 BS02 >1u35:J (identical to 2f8n:J)
    atcaatatccacctgcagattctaccaaaagtgtatttggaaactgctcc
atcaaaaggcatgttcagcggattccgctgaacatgccttttgatggagc
agtttccaaatacacttttggtagaatctgcaggtggatattgat
    		 ? GO:0000786 ... P68433 16107708
    2721 1u35:F
    (3.0)    		 BS01 >1u35:I (identical to 2f8n:I)
    atcaatatccacctgcagattctaccaaaagtgtatttggaaactgctcc
atcaaaaggcatgttcagcggaatccgctgaacatgccttttgatggagc
agtttccaaatacacttttggtagaatctgcaggtggatattgat
    		 ? GO:0000786 ... P62806 16107708
    2722 1u35:F
    (3.0)    		 BS02 >1u35:J (identical to 2f8n:J)
    atcaatatccacctgcagattctaccaaaagtgtatttggaaactgctcc
atcaaaaggcatgttcagcggattccgctgaacatgccttttgatggagc
agtttccaaatacacttttggtagaatctgcaggtggatattgat
    		 ? GO:0000786 ... P62806 16107708
    2723 1u35:G
    (3.0)    		 BS01 >1u35:I (identical to 2f8n:I)
    atcaatatccacctgcagattctaccaaaagtgtatttggaaactgctcc
atcaaaaggcatgttcagcggaatccgctgaacatgccttttgatggagc
agtttccaaatacacttttggtagaatctgcaggtggatattgat
    		 ? GO:0000786 ... O75367 16107708
    2724 1u35:G
    (3.0)    		 BS02 >1u35:J (identical to 2f8n:J)
    atcaatatccacctgcagattctaccaaaagtgtatttggaaactgctcc
atcaaaaggcatgttcagcggattccgctgaacatgccttttgatggagc
agtttccaaatacacttttggtagaatctgcaggtggatattgat
    		 ? GO:0000786 ... O75367 16107708
    2725 1u35:H
    (3.0)    		 BS01 >1u35:I (identical to 2f8n:I)
    atcaatatccacctgcagattctaccaaaagtgtatttggaaactgctcc
atcaaaaggcatgttcagcggaatccgctgaacatgccttttgatggagc
agtttccaaatacacttttggtagaatctgcaggtggatattgat
    		 ? GO:0000786 ... Q9D2U9 16107708
    2726 1u35:H
    (3.0)    		 BS02 >1u35:J (identical to 2f8n:J)
    atcaatatccacctgcagattctaccaaaagtgtatttggaaactgctcc
atcaaaaggcatgttcagcggattccgctgaacatgccttttgatggagc
agtttccaaatacacttttggtagaatctgcaggtggatattgat
    		 ? GO:0000786 ... Q9D2U9 16107708
    2727 1u3e:M
    (2.92)    		 BS01 >1u3e:A
    gtaatgagcctaacgctcagcaattcccacgtaaga
    		 3.1.-.- GO:0004519 ... P34081 15313606
    2728 1u3e:M
    (2.92)    		 BS02 >1u3e:B
    cttacgtgggaattgctgagc
    		 3.1.-.- GO:0004519 ... P34081 15313606
    2729 1u3e:M
    (2.92)    		 BS03 >1u3e:C
    gttaggctcattact
    		 3.1.-.- GO:0004519 ... P34081 15313606
    2730 1u45:A
    (2.01)    		 BS01 >1u45:B (identical to 4dsi:C, 3ez5:B, 3ez5:E, 4ez6:B, 4ez6:E, 4f4k:B, 4f4k:E, 4f8r:B, 4f8r:E, 2hhw:E, 2hhw:B, 2hhx:B, 2hvh:B, 2hvh:E, 2hvi:B, 2hvi:E, 3ti0:B, 3ti0:E)
    cctgactcg
    		 2.7.7.7 GO:0003676 ... P52026 15322558
    2731 1u45:A
    (2.01)    		 BS02 >1u45:C (identical to 4ez6:C, 2hhw:F, 2hhw:C, 2hvh:C, 2hvh:F)
    tgcgagtcagg
    		 2.7.7.7 GO:0003676 ... P52026 15322558
    2732 1u47:A
    (2.0)    		 BS01 >1u47:B (identical to 3eyz:B)
    cctgactcgc
    		 2.7.7.7 GO:0003676 ... P52026 15322558
    2733 1u47:A
    (2.0)    		 BS02 >1u47:C (identical to 1u49:C)
    gcgagtcaggct
    		 2.7.7.7 GO:0003676 ... P52026 15322558
    2734 1u48:A
    (2.1)    		 BS01 >1u48:B
    ctgactcgca
    		 2.7.7.7 GO:0003676 ... P52026 15322558
    2735 1u48:A
    (2.1)    		 BS02 >1u48:C
    atgcgagtcaggc
    		 2.7.7.7 GO:0003676 ... P52026 15322558
    2736 1u49:A
    (2.15)    		 BS01 >1u49:B
    cctgactcga
    		 2.7.7.7 GO:0003676 ... P52026 15322558
    2737 1u49:A
    (2.15)    		 BS02 >1u49:C (identical to 1u47:C)
    gcgagtcaggct
    		 2.7.7.7 GO:0003676 ... P52026 15322558
    2738 1u4b:A
    (1.6)    		 BS01 >1u4b:B
    tgactcgata
    		 2.7.7.7 GO:0003676 ... P52026 15322558
    2739 1u4b:A
    (1.6)    		 BS02 >1u4b:C
    ctagcgagtcagg
    		 2.7.7.7 GO:0003676 ... P52026 15322558
    2740 1u78:A
    (2.69)    		 BS01 >1u78:B
    gggggtcctatagaactttcccacac
    		 ? GO:0003677 ... P34257 15304566
    2741 1u78:A
    (2.69)    		 BS02 >1u78:C
    tgtgggaaagttctataggacccccg
    		 ? GO:0003677 ... P34257 15304566
    2742 1u8b:A
    (2.1)    		 BS01 >1u8b:B
    aaatt
    		 2.1.1.63
    2.1.1.n11    		 GO:0003677 ... P06134 16209950
    2743 1u8b:A
    (2.1)    		 BS02 >1u8b:C
    aattt
    		 2.1.1.63
    2.1.1.n11    		 GO:0003677 ... P06134 16209950
    2744 1u8b:A
    (2.1)    		 BS03 >1u8b:D
    aaagcgcaagat
    		 2.1.1.63
    2.1.1.n11    		 GO:0003677 ... P06134 16209950
    2745 1u8b:A
    (2.1)    		 BS04 >1u8b:E
    atcttgcgcttt
    		 2.1.1.63
    2.1.1.n11    		 GO:0003677 ... P06134 16209950
    2746 1u8r:A
    (2.75)    		 BS01 >1u8r:E (identical to 2isz:E, 2it0:E, 1u8r:K)
    ccctgttagcacaggctgccctaattttagtgg
    		 ? GO:0003677 ... P9WMH1 15351642
    2747 1u8r:A
    (2.75)    		 BS02 >1u8r:F (identical to 2isz:F, 2it0:F, 1u8r:L)
    cactaaaattagggcagcctgtgctaacagggc
    		 ? GO:0003677 ... P9WMH1 15351642
    2748 1u8r:B
    (2.75)    		 BS01 >1u8r:E (identical to 2isz:E, 2it0:E, 1u8r:K)
    ccctgttagcacaggctgccctaattttagtgg
    		 ? GO:0003677 ... P9WMH1 15351642
    2749 1u8r:B
    (2.75)    		 BS02 >1u8r:F (identical to 2isz:F, 2it0:F, 1u8r:L)
    cactaaaattagggcagcctgtgctaacagggc
    		 ? GO:0003677 ... P9WMH1 15351642
    2750 1u8r:C
    (2.75)    		 BS01 >1u8r:E (identical to 2isz:E, 2it0:E, 1u8r:K)
    ccctgttagcacaggctgccctaattttagtgg
    		 ? GO:0003677 ... P9WMH1 15351642
    2751 1u8r:C
    (2.75)    		 BS02 >1u8r:F (identical to 2isz:F, 2it0:F, 1u8r:L)
    cactaaaattagggcagcctgtgctaacagggc
    		 ? GO:0003677 ... P9WMH1 15351642
    2752 1u8r:D
    (2.75)    		 BS01 >1u8r:E (identical to 2isz:E, 2it0:E, 1u8r:K)
    ccctgttagcacaggctgccctaattttagtgg
    		 ? GO:0003677 ... P9WMH1 15351642
    2753 1u8r:D
    (2.75)    		 BS02 >1u8r:F (identical to 2isz:F, 2it0:F, 1u8r:L)
    cactaaaattagggcagcctgtgctaacagggc
    		 ? GO:0003677 ... P9WMH1 15351642
    2754 1u8r:G
    (2.75)    		 BS01 >1u8r:K (identical to 2isz:E, 2it0:E, 1u8r:E)
    ccctgttagcacaggctgccctaattttagtgg
    		 ? GO:0003677 ... P9WMH1 15351642
    2755 1u8r:G
    (2.75)    		 BS02 >1u8r:L (identical to 2isz:F, 2it0:F, 1u8r:F)
    cactaaaattagggcagcctgtgctaacagggc
    		 ? GO:0003677 ... P9WMH1 15351642
    2756 1u8r:H
    (2.75)    		 BS01 >1u8r:K (identical to 2isz:E, 2it0:E, 1u8r:E)
    ccctgttagcacaggctgccctaattttagtgg
    		 ? GO:0003677 ... P9WMH1 15351642
    2757 1u8r:H
    (2.75)    		 BS02 >1u8r:L (identical to 2isz:F, 2it0:F, 1u8r:F)
    cactaaaattagggcagcctgtgctaacagggc
    		 ? GO:0003677 ... P9WMH1 15351642
    2758 1u8r:I
    (2.75)    		 BS01 >1u8r:K (identical to 2isz:E, 2it0:E, 1u8r:E)
    ccctgttagcacaggctgccctaattttagtgg
    		 ? GO:0003677 ... P9WMH1 15351642
    2759 1u8r:I
    (2.75)    		 BS02 >1u8r:L (identical to 2isz:F, 2it0:F, 1u8r:F)
    cactaaaattagggcagcctgtgctaacagggc
    		 ? GO:0003677 ... P9WMH1 15351642
    2760 1u8r:J
    (2.75)    		 BS01 >1u8r:K (identical to 2isz:E, 2it0:E, 1u8r:E)
    ccctgttagcacaggctgccctaattttagtgg
    		 ? GO:0003677 ... P9WMH1 15351642
    2761 1u8r:J
    (2.75)    		 BS02 >1u8r:L (identical to 2isz:F, 2it0:F, 1u8r:F)
    cactaaaattagggcagcctgtgctaacagggc
    		 ? GO:0003677 ... P9WMH1 15351642
    2762 1ua0:A
    (2.1)    		 BS01 >1ua0:B
    gggatggtg
    		 2.7.7.7 GO:0003676 ... Q5KWC1 15385534
    2763 1ua0:A
    (2.1)    		 BS02 >1ua0:C (identical to 1ua1:C)
    tgcaccatccct
    		 2.7.7.7 GO:0003676 ... Q5KWC1 15385534
    2764 1ua1:A
    (2.0)    		 BS01 >1ua1:B
    agggatggtgc
    		 2.7.7.7 GO:0003676 ... P52026 15385534
    2765 1ua1:A
    (2.0)    		 BS02 >1ua1:C (identical to 1ua0:C)
    tgcaccatccct
    		 2.7.7.7 GO:0003676 ... P52026 15385534
    2766 1uaa:A
    (3.0)    		 BS01 >1uaa:C (identical to 6n7t:T, 6n7v:T, 8qqu:E, 6sko:I, 8u5y:D, 8u61:E, 6vaa:Z)
    tttttttttttttttt
    		 5.6.2.4 GO:0000725 ... P09980 9288744
    2767 1uaa:B
    (3.0)    		 BS01 >1uaa:C (identical to 6n7t:T, 6n7v:T, 8qqu:E, 6sko:I, 8u5y:D, 8u61:E, 6vaa:Z)
    tttttttttttttttt
    		 5.6.2.4 GO:0000725 ... P09980 9288744
    2768 1ubd:C
    (2.5)    		 BS01 >1ubd:A
    agggtctccattttgaagcg
    		 ? N/A P25490 8942976
    2769 1ubd:C
    (2.5)    		 BS02 >1ubd:B
    cgcttcaaaatggagaccct
    		 ? N/A P25490 8942976
    2770 1uut:A
    (2.0)    		 BS01 >1uut:C (identical to 1uut:D)
    cagctctttgagctg
    		 ? N/A Q9YJC1 14967147
    2771 1uut:B
    (2.0)    		 BS01 >1uut:D (identical to 1uut:C)
    cagctctttgagctg
    		 ? N/A Q9YJC1 14967147
    2772 1v14:A
    (2.9)    		 BS01 >1v14:E (identical to 1v14:G, 1v14:I, 1v14:K, 1v15:G, 1v15:K)
    gatcgc
    		 3.1.-.- GO:0004519 ... P09883 15190054
    2773 1v14:A
    (2.9)    		 BS02 >1v14:F (identical to 1azp:B, 1azp:C, 2dnj:B, 5hrg:C, 5hrg:D, 3kxt:B, 3kxt:C, 3lwi:C, 3lwi:D, 3lwi:E, 3lwi:F, 1oup:C, 1oup:D, 1oup:F, 1pt3:C, 1pt3:D, 1pt3:E, 1pt3:F, 1v14:H, 1v14:J, 1v14:L, 1v15:F, 1v15:H, 1v15:J, 1v15:L, 1wto:B, 1wto:C, 1wtr:B, 1wtr:C, 1wtw:B, 1wtw:C, 5wvz:C, 5wvz:D, 5wvz:E, 5wvz:F, 1xyi:B, 1xyi:C)
    gcgatcgc
    		 3.1.-.- GO:0004519 ... P09883 15190054
    2774 1v14:B
    (2.9)    		 BS01 >1v14:G (identical to 1v14:E, 1v14:I, 1v14:K, 1v15:G, 1v15:K)
    gatcgc
    		 3.1.-.- GO:0004519 ... P09883 15190054
    2775 1v14:B
    (2.9)    		 BS02 >1v14:H (identical to 1azp:B, 1azp:C, 2dnj:B, 5hrg:C, 5hrg:D, 3kxt:B, 3kxt:C, 3lwi:C, 3lwi:D, 3lwi:E, 3lwi:F, 1oup:C, 1oup:D, 1oup:F, 1pt3:C, 1pt3:D, 1pt3:E, 1pt3:F, 1v14:F, 1v14:J, 1v14:L, 1v15:F, 1v15:H, 1v15:J, 1v15:L, 1wto:B, 1wto:C, 1wtr:B, 1wtr:C, 1wtw:B, 1wtw:C, 5wvz:C, 5wvz:D, 5wvz:E, 5wvz:F, 1xyi:B, 1xyi:C)
    gcgatcgc
    		 3.1.-.- GO:0004519 ... P09883 15190054
    2776 1v14:B
    (2.9)    		 BS03 >1v14:L (identical to 1azp:B, 1azp:C, 2dnj:B, 5hrg:C, 5hrg:D, 3kxt:B, 3kxt:C, 3lwi:C, 3lwi:D, 3lwi:E, 3lwi:F, 1oup:C, 1oup:D, 1oup:F, 1pt3:C, 1pt3:D, 1pt3:E, 1pt3:F, 1v14:F, 1v14:H, 1v14:J, 1v15:F, 1v15:H, 1v15:J, 1v15:L, 1wto:B, 1wto:C, 1wtr:B, 1wtr:C, 1wtw:B, 1wtw:C, 5wvz:C, 5wvz:D, 5wvz:E, 5wvz:F, 1xyi:B, 1xyi:C)
    gcgatcgc
    		 3.1.-.- GO:0004519 ... P09883 15190054
    2777 1v14:C
    (2.9)    		 BS01 >1v14:G (identical to 1v14:E, 1v14:I, 1v14:K, 1v15:G, 1v15:K)
    gatcgc
    		 3.1.-.- GO:0004519 ... P09883 15190054
    2778 1v14:C
    (2.9)    		 BS02 >1v14:H (identical to 1azp:B, 1azp:C, 2dnj:B, 5hrg:C, 5hrg:D, 3kxt:B, 3kxt:C, 3lwi:C, 3lwi:D, 3lwi:E, 3lwi:F, 1oup:C, 1oup:D, 1oup:F, 1pt3:C, 1pt3:D, 1pt3:E, 1pt3:F, 1v14:F, 1v14:J, 1v14:L, 1v15:F, 1v15:H, 1v15:J, 1v15:L, 1wto:B, 1wto:C, 1wtr:B, 1wtr:C, 1wtw:B, 1wtw:C, 5wvz:C, 5wvz:D, 5wvz:E, 5wvz:F, 1xyi:B, 1xyi:C)
    gcgatcgc
    		 3.1.-.- GO:0004519 ... P09883 15190054
    2779 1v14:C
    (2.9)    		 BS03 >1v14:I (identical to 1v14:E, 1v14:G, 1v14:K, 1v15:G, 1v15:K)
    gatcgc
    		 3.1.-.- GO:0004519 ... P09883 15190054
    2780 1v14:C
    (2.9)    		 BS04 >1v14:J (identical to 1azp:B, 1azp:C, 2dnj:B, 5hrg:C, 5hrg:D, 3kxt:B, 3kxt:C, 3lwi:C, 3lwi:D, 3lwi:E, 3lwi:F, 1oup:C, 1oup:D, 1oup:F, 1pt3:C, 1pt3:D, 1pt3:E, 1pt3:F, 1v14:F, 1v14:H, 1v14:L, 1v15:F, 1v15:H, 1v15:J, 1v15:L, 1wto:B, 1wto:C, 1wtr:B, 1wtr:C, 1wtw:B, 1wtw:C, 5wvz:C, 5wvz:D, 5wvz:E, 5wvz:F, 1xyi:B, 1xyi:C)
    gcgatcgc
    		 3.1.-.- GO:0004519 ... P09883 15190054
    2781 1v14:D
    (2.9)    		 BS01 >1v14:H (identical to 1azp:B, 1azp:C, 2dnj:B, 5hrg:C, 5hrg:D, 3kxt:B, 3kxt:C, 3lwi:C, 3lwi:D, 3lwi:E, 3lwi:F, 1oup:C, 1oup:D, 1oup:F, 1pt3:C, 1pt3:D, 1pt3:E, 1pt3:F, 1v14:F, 1v14:J, 1v14:L, 1v15:F, 1v15:H, 1v15:J, 1v15:L, 1wto:B, 1wto:C, 1wtr:B, 1wtr:C, 1wtw:B, 1wtw:C, 5wvz:C, 5wvz:D, 5wvz:E, 5wvz:F, 1xyi:B, 1xyi:C)
    gcgatcgc
    		 3.1.-.- GO:0004519 ... P09883 15190054
    2782 1v14:D
    (2.9)    		 BS02 >1v14:K (identical to 1v14:E, 1v14:G, 1v14:I, 1v15:G, 1v15:K)
    gatcgc
    		 3.1.-.- GO:0004519 ... P09883 15190054
    2783 1v14:D
    (2.9)    		 BS03 >1v14:L (identical to 1azp:B, 1azp:C, 2dnj:B, 5hrg:C, 5hrg:D, 3kxt:B, 3kxt:C, 3lwi:C, 3lwi:D, 3lwi:E, 3lwi:F, 1oup:C, 1oup:D, 1oup:F, 1pt3:C, 1pt3:D, 1pt3:E, 1pt3:F, 1v14:F, 1v14:H, 1v14:J, 1v15:F, 1v15:H, 1v15:J, 1v15:L, 1wto:B, 1wto:C, 1wtr:B, 1wtr:C, 1wtw:B, 1wtw:C, 5wvz:C, 5wvz:D, 5wvz:E, 5wvz:F, 1xyi:B, 1xyi:C)
    gcgatcgc
    		 3.1.-.- GO:0004519 ... P09883 15190054
    2784 1v15:A
    (2.4)    		 BS01 >1v15:E (identical to 1v15:I)
    cgatcgc
    		 3.1.-.- GO:0004519 ... P09883 15190054
    2785 1v15:A
    (2.4)    		 BS02 >1v15:F (identical to 1azp:B, 1azp:C, 2dnj:B, 5hrg:C, 5hrg:D, 3kxt:B, 3kxt:C, 3lwi:C, 3lwi:D, 3lwi:E, 3lwi:F, 1oup:C, 1oup:D, 1oup:F, 1pt3:C, 1pt3:D, 1pt3:E, 1pt3:F, 1v14:F, 1v14:H, 1v14:J, 1v14:L, 1v15:H, 1v15:J, 1v15:L, 1wto:B, 1wto:C, 1wtr:B, 1wtr:C, 1wtw:B, 1wtw:C, 5wvz:C, 5wvz:D, 5wvz:E, 5wvz:F, 1xyi:B, 1xyi:C)
    gcgatcgc
    		 3.1.-.- GO:0004519 ... P09883 15190054
    2786 1v15:B
    (2.4)    		 BS01 >1v15:E (identical to 1v15:I)
    cgatcgc
    		 3.1.-.- GO:0004519 ... P09883 15190054
    2787 1v15:B
    (2.4)    		 BS02 >1v15:F (identical to 1azp:B, 1azp:C, 2dnj:B, 5hrg:C, 5hrg:D, 3kxt:B, 3kxt:C, 3lwi:C, 3lwi:D, 3lwi:E, 3lwi:F, 1oup:C, 1oup:D, 1oup:F, 1pt3:C, 1pt3:D, 1pt3:E, 1pt3:F, 1v14:F, 1v14:H, 1v14:J, 1v14:L, 1v15:H, 1v15:J, 1v15:L, 1wto:B, 1wto:C, 1wtr:B, 1wtr:C, 1wtw:B, 1wtw:C, 5wvz:C, 5wvz:D, 5wvz:E, 5wvz:F, 1xyi:B, 1xyi:C)
    gcgatcgc
    		 3.1.-.- GO:0004519 ... P09883 15190054
    2788 1v15:B
    (2.4)    		 BS03 >1v15:G (identical to 1v14:E, 1v14:G, 1v14:I, 1v14:K, 1v15:K)
    gatcgc
    		 3.1.-.- GO:0004519 ... P09883 15190054
    2789 1v15:B
    (2.4)    		 BS04 >1v15:H (identical to 1azp:B, 1azp:C, 2dnj:B, 5hrg:C, 5hrg:D, 3kxt:B, 3kxt:C, 3lwi:C, 3lwi:D, 3lwi:E, 3lwi:F, 1oup:C, 1oup:D, 1oup:F, 1pt3:C, 1pt3:D, 1pt3:E, 1pt3:F, 1v14:F, 1v14:H, 1v14:J, 1v14:L, 1v15:F, 1v15:J, 1v15:L, 1wto:B, 1wto:C, 1wtr:B, 1wtr:C, 1wtw:B, 1wtw:C, 5wvz:C, 5wvz:D, 5wvz:E, 5wvz:F, 1xyi:B, 1xyi:C)
    gcgatcgc
    		 3.1.-.- GO:0004519 ... P09883 15190054
    2790 1v15:B
    (2.4)    		 BS05 >1v15:L (identical to 1azp:B, 1azp:C, 2dnj:B, 5hrg:C, 5hrg:D, 3kxt:B, 3kxt:C, 3lwi:C, 3lwi:D, 3lwi:E, 3lwi:F, 1oup:C, 1oup:D, 1oup:F, 1pt3:C, 1pt3:D, 1pt3:E, 1pt3:F, 1v14:F, 1v14:H, 1v14:J, 1v14:L, 1v15:F, 1v15:H, 1v15:J, 1wto:B, 1wto:C, 1wtr:B, 1wtr:C, 1wtw:B, 1wtw:C, 5wvz:C, 5wvz:D, 5wvz:E, 5wvz:F, 1xyi:B, 1xyi:C)
    gcgatcgc
    		 3.1.-.- GO:0004519 ... P09883 15190054
    2791 1v15:C
    (2.4)    		 BS01 >1v15:I (identical to 1v15:E)
    cgatcgc
    		 3.1.-.- GO:0004519 ... P09883 15190054
    2792 1v15:C
    (2.4)    		 BS02 >1v15:J (identical to 1azp:B, 1azp:C, 2dnj:B, 5hrg:C, 5hrg:D, 3kxt:B, 3kxt:C, 3lwi:C, 3lwi:D, 3lwi:E, 3lwi:F, 1oup:C, 1oup:D, 1oup:F, 1pt3:C, 1pt3:D, 1pt3:E, 1pt3:F, 1v14:F, 1v14:H, 1v14:J, 1v14:L, 1v15:F, 1v15:H, 1v15:L, 1wto:B, 1wto:C, 1wtr:B, 1wtr:C, 1wtw:B, 1wtw:C, 5wvz:C, 5wvz:D, 5wvz:E, 5wvz:F, 1xyi:B, 1xyi:C)
    gcgatcgc
    		 3.1.-.- GO:0004519 ... P09883 15190054
    2793 1v15:D
    (2.4)    		 BS01 >1v15:H (identical to 1azp:B, 1azp:C, 2dnj:B, 5hrg:C, 5hrg:D, 3kxt:B, 3kxt:C, 3lwi:C, 3lwi:D, 3lwi:E, 3lwi:F, 1oup:C, 1oup:D, 1oup:F, 1pt3:C, 1pt3:D, 1pt3:E, 1pt3:F, 1v14:F, 1v14:H, 1v14:J, 1v14:L, 1v15:F, 1v15:J, 1v15:L, 1wto:B, 1wto:C, 1wtr:B, 1wtr:C, 1wtw:B, 1wtw:C, 5wvz:C, 5wvz:D, 5wvz:E, 5wvz:F, 1xyi:B, 1xyi:C)
    gcgatcgc
    		 3.1.-.- GO:0004519 ... P09883 15190054
    2794 1v15:D
    (2.4)    		 BS02 >1v15:I (identical to 1v15:E)
    cgatcgc
    		 3.1.-.- GO:0004519 ... P09883 15190054
    2795 1v15:D
    (2.4)    		 BS03 >1v15:J (identical to 1azp:B, 1azp:C, 2dnj:B, 5hrg:C, 5hrg:D, 3kxt:B, 3kxt:C, 3lwi:C, 3lwi:D, 3lwi:E, 3lwi:F, 1oup:C, 1oup:D, 1oup:F, 1pt3:C, 1pt3:D, 1pt3:E, 1pt3:F, 1v14:F, 1v14:H, 1v14:J, 1v14:L, 1v15:F, 1v15:H, 1v15:L, 1wto:B, 1wto:C, 1wtr:B, 1wtr:C, 1wtw:B, 1wtw:C, 5wvz:C, 5wvz:D, 5wvz:E, 5wvz:F, 1xyi:B, 1xyi:C)
    gcgatcgc
    		 3.1.-.- GO:0004519 ... P09883 15190054
    2796 1v15:D
    (2.4)    		 BS04 >1v15:K (identical to 1v14:E, 1v14:G, 1v14:I, 1v14:K, 1v15:G)
    gatcgc
    		 3.1.-.- GO:0004519 ... P09883 15190054
    2797 1v15:D
    (2.4)    		 BS05 >1v15:L (identical to 1azp:B, 1azp:C, 2dnj:B, 5hrg:C, 5hrg:D, 3kxt:B, 3kxt:C, 3lwi:C, 3lwi:D, 3lwi:E, 3lwi:F, 1oup:C, 1oup:D, 1oup:F, 1pt3:C, 1pt3:D, 1pt3:E, 1pt3:F, 1v14:F, 1v14:H, 1v14:J, 1v14:L, 1v15:F, 1v15:H, 1v15:J, 1wto:B, 1wto:C, 1wtr:B, 1wtr:C, 1wtw:B, 1wtw:C, 5wvz:C, 5wvz:D, 5wvz:E, 5wvz:F, 1xyi:B, 1xyi:C)
    gcgatcgc
    		 3.1.-.- GO:0004519 ... P09883 15190054
    2798 1vas:A
    (2.75)    		 BS01 >1vas:B
    atcgcgttgcgct
    		 3.2.2.17
    4.2.99.18    		 GO:0000704 ... P04418 8521494
    2799 1vas:A
    (2.75)    		 BS02 >1vas:C
    tagcgcaacgcga
    		 3.2.2.17
    4.2.99.18    		 GO:0000704 ... P04418 8521494
    2800 1vfc:A
    (-1.00)    		 BS01 >1vfc:B (identical to 1iv6:B)
    gttagggttaggg
    		 ? GO:0000723 ... Q15554 15608118 PDBbind: Kd=0.75uM
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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