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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 45686 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • The sequence is converted from residues with experimentally determined coordinates in the structure; residues not observed in the 3D structure are excluded.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (resolution)     		Site
    #     		DNA
    sequence         		EC
    number     		GO
    terms     		UniProt PubMed Binding
    affinity
    2601 1tez:B
    (1.8)    		 BS01 >1tez:K (identical to 1tez:I)
    atcggct
    		 4.1.99.3 GO:0000166 ... P05327 15576622
    2602 1tez:B
    (1.8)    		 BS02 >1tez:L (identical to 1tez:J)
    cgaagccga
    		 4.1.99.3 GO:0000166 ... P05327 15576622
    2603 1tez:C
    (1.8)    		 BS01 >1tez:M (identical to 1tez:O, 5zln:E, 5zln:F)
    tcgc
    		 4.1.99.3 GO:0000166 ... P05327 15576622
    2604 1tez:C
    (1.8)    		 BS02 >1tez:N (identical to 1tez:P)
    gccga
    		 4.1.99.3 GO:0000166 ... P05327 15576622
    2605 1tez:D
    (1.8)    		 BS01 >1tez:O (identical to 1tez:M, 5zln:E, 5zln:F)
    tcgc
    		 4.1.99.3 GO:0000166 ... P05327 15576622
    2606 1tez:D
    (1.8)    		 BS02 >1tez:P (identical to 1tez:N)
    gccga
    		 4.1.99.3 GO:0000166 ... P05327 15576622
    2607 1tf3:A
    (-1.00)    		 BS01 >1tf3:E
    ttggatgggagaccg
    		 ? N/A P03001 9253405
    2608 1tf3:A
    (-1.00)    		 BS02 >1tf3:F
    cggtctcccatccaa
    		 ? N/A P03001 9253405
    2609 1tf6:A
    (3.1)    		 BS01 >1tf6:B (identical to 1tf6:E)
    acgggcctggttagtacctggatgggagacc
    		 ? N/A P03001 9501194
    2610 1tf6:A
    (3.1)    		 BS02 >1tf6:C (identical to 1tf6:F)
    tggtctcccatccaggtactaaccaggcccg
    		 ? N/A P03001 9501194
    2611 1tf6:D
    (3.1)    		 BS01 >1tf6:E (identical to 1tf6:B)
    acgggcctggttagtacctggatgggagacc
    		 ? N/A P03001 9501194
    2612 1tf6:D
    (3.1)    		 BS02 >1tf6:F (identical to 1tf6:C)
    tggtctcccatccaggtactaaccaggcccg
    		 ? N/A P03001 9501194
    2613 1tgh:A
    (2.9)    		 BS01 >1tgh:B (identical to 1tgh:C)
    cgtatatatacg
    		 ? GO:0003677 ... P20226 8757291
    2614 1tgh:A
    (2.9)    		 BS02 >1tgh:C (identical to 1tgh:B)
    cgtatatatacg
    		 ? GO:0003677 ... P20226 8757291
    2615 1tk0:A
    (2.3)    		 BS01 >1tk0:P (identical to 1zyq:P)
    cggccagtgccag
    		 2.7.7.7
    3.1.11.-    		 GO:0000166 ... P00581 15297882
    2616 1tk0:A
    (2.3)    		 BS02 >1tk0:T
    cgctggcactggccgt
    		 2.7.7.7
    3.1.11.-    		 GO:0000166 ... P00581 15297882
    2617 1tk5:A
    (2.2)    		 BS01 >1tk5:P
    gccagtgccag
    		 2.7.7.7
    3.1.11.-    		 GO:0000166 ... P00581 15297882
    2618 1tk5:A
    (2.2)    		 BS02 >1tk5:T
    ctggcactggccg
    		 2.7.7.7
    3.1.11.-    		 GO:0000166 ... P00581 15297882
    2619 1tk8:A
    (2.5)    		 BS01 >1tk8:P
    acgacggccagtgccaa
    		 2.7.7.7
    3.1.11.-    		 GO:0000166 ... P00581 15297882
    2620 1tk8:A
    (2.5)    		 BS02 >1tk8:T
    cagtggcactggccgtcgtt
    		 2.7.7.7
    3.1.11.-    		 GO:0000166 ... P00581 15297882
    2621 1tkd:A
    (2.49)    		 BS01 >1tkd:P
    cgacggccagtgccac
    		 2.7.7.7
    3.1.11.-    		 GO:0000166 ... P00581 15297882
    2622 1tkd:A
    (2.49)    		 BS02 >1tkd:T
    cagtggcactggccgtcgt
    		 2.7.7.7
    3.1.11.-    		 GO:0000166 ... P00581 15297882
    2623 1tl8:A
    (3.1)    		 BS01 >1tl8:B (identical to 2b9s:C, 1k4t:B, 1sc7:B, 1seu:B, 1t8i:B)
    aaaaagactt
    		 5.6.2.1 GO:0003677 ... P11387 16033260
    2624 1tl8:A
    (3.1)    		 BS02 >1tl8:C
    cgaaaaattttt
    		 5.6.2.1 GO:0003677 ... P11387 16033260
    2625 1tl8:A
    (3.1)    		 BS03 >1tl8:D
    aaaaatttttcgaagtcttttt
    		 5.6.2.1 GO:0003677 ... P11387 16033260
    2626 1tn9:A
    (-1.00)    		 BS01 >1tn9:B (identical to 1b69:B)
    gagtagtaaattc
    		 ? GO:0003677 ... P22886 10201406
    2627 1tn9:A
    (-1.00)    		 BS02 >1tn9:C (identical to 1b69:C)
    gaatttactactc
    		 ? GO:0003677 ... P22886 10201406
    2628 1tqe:P
    (2.7)    		 BS01 >1tqe:C (identical to 1tqe:E)
    aaagctatttataagca
    		 ? GO:0000977 ... Q02080 15567413 PDBbind: Kd=0.72uM
    2629 1tqe:P
    (2.7)    		 BS02 >1tqe:D (identical to 1tqe:F)
    ttgcttataaatagctt
    		 ? GO:0000977 ... Q02080 15567413 PDBbind: Kd=0.72uM
    2630 1tqe:Q
    (2.7)    		 BS01 >1tqe:C (identical to 1tqe:E)
    aaagctatttataagca
    		 ? GO:0000977 ... Q02080 15567413 PDBbind: Kd=0.72uM
    2631 1tqe:Q
    (2.7)    		 BS02 >1tqe:D (identical to 1tqe:F)
    ttgcttataaatagctt
    		 ? GO:0000977 ... Q02080 15567413 PDBbind: Kd=0.72uM
    2632 1tqe:R
    (2.7)    		 BS01 >1tqe:E (identical to 1tqe:C)
    aaagctatttataagca
    		 ? GO:0000977 ... Q02080 15567413 PDBbind: Kd=0.72uM
    2633 1tqe:R
    (2.7)    		 BS02 >1tqe:F (identical to 1tqe:D)
    ttgcttataaatagctt
    		 ? GO:0000977 ... Q02080 15567413 PDBbind: Kd=0.72uM
    2634 1tqe:S
    (2.7)    		 BS01 >1tqe:E (identical to 1tqe:C)
    aaagctatttataagca
    		 ? GO:0000977 ... Q02080 15567413 PDBbind: Kd=0.72uM
    2635 1tqe:S
    (2.7)    		 BS02 >1tqe:F (identical to 1tqe:D)
    ttgcttataaatagctt
    		 ? GO:0000977 ... Q02080 15567413 PDBbind: Kd=0.72uM
    2636 1tro:A
    (1.9)    		 BS01 >1tro:I (identical to 1tro:J, 1tro:K, 1tro:L)
    tgtactagttaactagtac
    		 ? GO:0003677 ... P0A881 3419502
    2637 1tro:A
    (1.9)    		 BS02 >1tro:J (identical to 1tro:I, 1tro:K, 1tro:L)
    tgtactagttaactagtac
    		 ? GO:0003677 ... P0A881 3419502
    2638 1tro:C
    (1.9)    		 BS01 >1tro:I (identical to 1tro:J, 1tro:K, 1tro:L)
    tgtactagttaactagtac
    		 ? GO:0003677 ... P0A881 3419502
    2639 1tro:C
    (1.9)    		 BS02 >1tro:J (identical to 1tro:I, 1tro:K, 1tro:L)
    tgtactagttaactagtac
    		 ? GO:0003677 ... P0A881 3419502
    2640 1tro:E
    (1.9)    		 BS01 >1tro:K (identical to 1tro:I, 1tro:J, 1tro:L)
    tgtactagttaactagtac
    		 ? GO:0003677 ... P0A881 3419502
    2641 1tro:E
    (1.9)    		 BS02 >1tro:L (identical to 1tro:I, 1tro:J, 1tro:K)
    tgtactagttaactagtac
    		 ? GO:0003677 ... P0A881 3419502
    2642 1tro:G
    (1.9)    		 BS01 >1tro:K (identical to 1tro:I, 1tro:J, 1tro:L)
    tgtactagttaactagtac
    		 ? GO:0003677 ... P0A881 3419502
    2643 1tro:G
    (1.9)    		 BS02 >1tro:L (identical to 1tro:I, 1tro:J, 1tro:K)
    tgtactagttaactagtac
    		 ? GO:0003677 ... P0A881 3419502
    2644 1trr:A
    (2.4)    		 BS01 >1trr:C (identical to 1trr:F, 1trr:I, 1trr:L)
    agcgtactagtacgct
    		 ? GO:0003677 ... P0A881 8232559
    2645 1trr:A
    (2.4)    		 BS02 >1trr:I (identical to 1trr:C, 1trr:F, 1trr:L)
    agcgtactagtacgct
    		 ? GO:0003677 ... P0A881 8232559
    2646 1trr:B
    (2.4)    		 BS01 >1trr:C (identical to 1trr:F, 1trr:I, 1trr:L)
    agcgtactagtacgct
    		 ? GO:0003677 ... P0A881 8232559
    2647 1trr:B
    (2.4)    		 BS02 >1trr:I (identical to 1trr:C, 1trr:F, 1trr:L)
    agcgtactagtacgct
    		 ? GO:0003677 ... P0A881 8232559
    2648 1trr:D
    (2.4)    		 BS01 >1trr:F (identical to 1trr:C, 1trr:I, 1trr:L)
    agcgtactagtacgct
    		 ? GO:0003677 ... P0A881 8232559
    2649 1trr:D
    (2.4)    		 BS02 >1trr:L (identical to 1trr:C, 1trr:F, 1trr:I)
    agcgtactagtacgct
    		 ? GO:0003677 ... P0A881 8232559
    2650 1trr:E
    (2.4)    		 BS01 >1trr:C (identical to 1trr:F, 1trr:I, 1trr:L)
    agcgtactagtacgct
    		 ? GO:0003677 ... P0A881 8232559
    2651 1trr:E
    (2.4)    		 BS02 >1trr:F (identical to 1trr:C, 1trr:I, 1trr:L)
    agcgtactagtacgct
    		 ? GO:0003677 ... P0A881 8232559
    2652 1trr:E
    (2.4)    		 BS03 >1trr:I (identical to 1trr:C, 1trr:F, 1trr:L)
    agcgtactagtacgct
    		 ? GO:0003677 ... P0A881 8232559
    2653 1trr:E
    (2.4)    		 BS04 >1trr:L (identical to 1trr:C, 1trr:F, 1trr:I)
    agcgtactagtacgct
    		 ? GO:0003677 ... P0A881 8232559
    2654 1trr:G
    (2.4)    		 BS01 >1trr:C (identical to 1trr:F, 1trr:I, 1trr:L)
    agcgtactagtacgct
    		 ? GO:0003677 ... P0A881 8232559
    2655 1trr:G
    (2.4)    		 BS02 >1trr:I (identical to 1trr:C, 1trr:F, 1trr:L)
    agcgtactagtacgct
    		 ? GO:0003677 ... P0A881 8232559
    2656 1trr:H
    (2.4)    		 BS01 >1trr:C (identical to 1trr:F, 1trr:I, 1trr:L)
    agcgtactagtacgct
    		 ? GO:0003677 ... P0A881 8232559
    2657 1trr:H
    (2.4)    		 BS02 >1trr:I (identical to 1trr:C, 1trr:F, 1trr:L)
    agcgtactagtacgct
    		 ? GO:0003677 ... P0A881 8232559
    2658 1trr:H
    (2.4)    		 BS03 >1trr:L (identical to 1trr:C, 1trr:F, 1trr:I)
    agcgtactagtacgct
    		 ? GO:0003677 ... P0A881 8232559
    2659 1trr:J
    (2.4)    		 BS01 >1trr:F (identical to 1trr:C, 1trr:I, 1trr:L)
    agcgtactagtacgct
    		 ? GO:0003677 ... P0A881 8232559
    2660 1trr:J
    (2.4)    		 BS02 >1trr:L (identical to 1trr:C, 1trr:F, 1trr:I)
    agcgtactagtacgct
    		 ? GO:0003677 ... P0A881 8232559
    2661 1trr:K
    (2.4)    		 BS01 >1trr:F (identical to 1trr:C, 1trr:I, 1trr:L)
    agcgtactagtacgct
    		 ? GO:0003677 ... P0A881 8232559
    2662 1trr:K
    (2.4)    		 BS02 >1trr:L (identical to 1trr:C, 1trr:F, 1trr:I)
    agcgtactagtacgct
    		 ? GO:0003677 ... P0A881 8232559
    2663 1tsr:A
    (2.2)    		 BS01 >1tsr:E (identical to 1tup:E)
    tttcctagacttgcccaatta
    		 ? GO:0000976 ... P04637 8023157
    2664 1tsr:B
    (2.2)    		 BS01 >1tsr:E (identical to 1tup:E)
    tttcctagacttgcccaatta
    		 ? GO:0000976 ... P04637 8023157
    2665 1tsr:B
    (2.2)    		 BS02 >1tsr:F (identical to 1tup:F)
    ataattgggcaagtctaggaa
    		 ? GO:0000976 ... P04637 8023157
    2666 1tsr:C
    (2.2)    		 BS01 >1tsr:E (identical to 1tup:E)
    tttcctagacttgcccaatta
    		 ? GO:0000976 ... P04637 8023157
    2667 1ttu:A
    (2.85)    		 BS01 >1ttu:B (identical to 3brd:B, 3brf:B, 3brg:B, 6dks:B, 6dks:F, 5e24:H, 5eg6:A, 2fo1:B, 4j2x:F, 4j2x:H)
    ttactgtgggaaaga
    		 ? GO:0000978 ... V6CLJ5 15297877
    2668 1ttu:A
    (2.85)    		 BS02 >1ttu:C (identical to 3brd:C, 3brf:C, 3brg:A, 6dks:A, 6dks:E, 5e24:G, 5eg6:B, 2fo1:C, 4j2x:E, 4j2x:G)
    aatctttcccacagt
    		 ? GO:0000978 ... V6CLJ5 15297877
    2669 1tup:A
    (2.2)    		 BS01 >1tup:E (identical to 1tsr:E)
    tttcctagacttgcccaatta
    		 ? GO:0000976 ... P04637 8023157
    2670 1tup:B
    (2.2)    		 BS01 >1tup:E (identical to 1tsr:E)
    tttcctagacttgcccaatta
    		 ? GO:0000976 ... P04637 8023157
    2671 1tup:B
    (2.2)    		 BS02 >1tup:F (identical to 1tsr:F)
    ataattgggcaagtctaggaa
    		 ? GO:0000976 ... P04637 8023157
    2672 1tup:C
    (2.2)    		 BS01 >1tup:E (identical to 1tsr:E)
    tttcctagacttgcccaatta
    		 ? GO:0000976 ... P04637 8023157
    2673 1tv9:A
    (2.0)    		 BS01 >1tv9:T (identical to 6bte:T, 3c2k:T, 6cti:T, 6ctj:T, 6ctk:T, 6ctl:T, 6ctm:T, 6ctn:T, 6cto:T, 6ctp:T, 2fmq:B, 2fms:T, 6g2q:T, 3gdx:T, 5j0t:T, 5j0u:T, 5j2f:T, 5j2g:T, 5j2h:T, 4jwm:T, 4jwn:T, 3lk9:T, 4m9g:T, 4m9h:T, 4m9j:T, 4m9l:T, 4m9n:T, 3mby:T, 6mr7:T, 6mr8:T, 4o9m:B, 2p66:B, 4r63:T, 4r64:T, 4r65:T, 4r66:T, 4rt2:T, 4rt3:T, 5tzv:T, 5u8g:T, 5u8h:T, 5u8i:T, 4uaw:T, 4uay:T, 4uaz:T, 4ub1:T, 6uom:T, 5wny:T, 5wo0:T)
    ccgacagcgcatcagc
    		 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 15458631
    2674 1tv9:A
    (2.0)    		 BS02 >1tv9:P (identical to 4kle:P, 4klf:P, 4klg:P, 4klh:P, 4kli:P, 4klj:P, 4kll:P, 4klm:P, 4klo:P, 4nm1:P, 4o9m:C, 2p66:C, 4ph5:P, 6ph5:P, 7rbi:P, 7rbj:P, 7rbk:P, 7rbl:P, 7rbm:P, 7rbn:P, 7rbo:P, 4rpy:P, 4rpz:P, 4rq0:P, 4rq1:P, 4rq2:P, 1tva:P, 5u9h:P, 5ugn:P, 5ugo:P)
    gctgatgcgcc
    		 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 15458631
    2675 1tv9:A
    (2.0)    		 BS03 >1tv9:D (identical to 6bel:D, 6bem:D, 5bol:D, 5bom:D, 1bpx:D, 1bpy:D, 1bpz:D, 5bpc:D, 6bte:D, 6btf:D, 3c2k:D, 3c2l:D, 3c2m:D, 6cly:D, 6cpq:D, 6cr3:D, 6cr4:D, 6cr5:D, 6cr6:D, 6cr7:D, 6cr8:D, 6cr9:D, 6crb:D, 6crc:D, 6crh:D, 6cti:D, 6ctj:D, 6ctk:D, 6ctl:D, 6ctm:D, 6ctn:D, 6cto:D, 6ctp:D, 6ctq:D, 6ctr:D, 6ctt:D, 6ctu:D, 6ctv:D, 6ctw:D, 6ctx:D, 6cu9:D, 6cua:D, 6cub:D, 5db6:D, 5db7:D, 5db8:D, 5db9:D, 5dba:D, 5dbb:D, 5dbc:D, 6dia:D, 6dic:D, 4do9:D, 4doa:D, 4dob:D, 4doc:D, 6e3r:D, 6e3v:D, 6e3w:D, 6e3x:D, 5eoz:D, 4f5n:D, 4f5o:D, 4f5p:D, 4f5q:D, 4f5r:D, 4f5r:C, 2fmp:D, 2fmq:D, 2fms:D, 6g2q:D, 3gdx:D, 4gxi:D, 4gxj:D, 4gxk:D, 5hhh:D, 5hhi:D, 2i9g:D, 2iso:D, 2isp:D, 3isb:D, 3isc:D, 3isd:D, 5j0o:D, 5j0p:D, 5j0q:D, 5j0r:D, 5j0s:D, 5j0t:D, 5j0u:D, 5j0w:D, 5j0x:D, 5j0y:D, 5j29:D, 5j2a:D, 5j2b:D, 5j2c:D, 5j2d:D, 5j2e:D, 5j2f:D, 5j2g:D, 5j2h:D, 5j2i:D, 5j2j:D, 5j2k:D, 3jpn:D, 3jpo:D, 3jpp:D, 3jpq:D, 3jpr:D, 3jps:D, 3jpt:D, 4jwm:D, 4jwn:D, 7k96:D, 7k97:D, 4kld:D, 4kle:D, 4klf:D, 4klg:D, 4klh:D, 4kli:D, 4klj:D, 4kll:D, 4klm:D, 4klo:D, 4klq:D, 4kls:D, 4klt:D, 4klu:D, 3lk9:D, 4lvs:D, 4m2y:D, 4m47:D, 4m9g:D, 4m9h:D, 4m9j:D, 4m9l:D, 4m9n:D, 3mby:D, 4mf2:D, 4mf8:D, 4mfa:D, 4mfc:D, 4mff:D, 1mq2:D, 1mq3:D, 6mr7:D, 6mr8:D, 7mz0:D, 7mz1:D, 7mz2:D, 7mz3:D, 7mz4:D, 7mz8:D, 6n2r:D, 6n2s:D, 6n2t:D, 6nkr:D, 6nks:D, 6nkt:D, 4nlk:D, 4nln:D, 4nlz:D, 4nm1:D, 4nm2:D, 4nxz:D, 4ny8:D, 4o5c:D, 4o5e:D, 4o5k:D, 4o9m:D, 4p2h:D, 4pgq:D, 4pgx:D, 4pgy:D, 4ph5:D, 4pha:D, 4phd:D, 4phe:D, 4php:D, 6ph5:D, 6ph6:D, 6pkz:D, 4ppx:D, 2pxi:D, 4r63:D, 4r64:D, 4r65:D, 4r66:D, 7rbe:D, 7rbf:D, 7rbg:D, 7rbh:D, 7rbi:D, 7rbj:D, 7rbk:D, 7rbl:D, 7rbm:D, 7rbn:D, 7rbo:D, 3rh4:D, 3rh5:D, 3rh6:D, 3rje:D, 3rjf:D, 3rjg:D, 3rjh:D, 3rji:D, 3rjj:D, 3rjk:D, 4rpx:D, 4rpy:D, 4rpz:D, 4rq0:D, 4rq1:D, 4rq2:D, 4rq3:D, 4rq4:D, 4rq5:D, 4rq6:D, 4rq7:D, 4rq8:D, 4rt2:D, 4rt3:D, 7s9j:D, 7s9k:D, 7s9l:D, 7s9m:D, 7s9n:D, 7s9o:D, 7s9p:D, 7s9q:D, 5tb8:D, 5tb9:D, 5tba:D, 5tbb:D, 5tbc:D, 3tfr:D, 3tfs:D, 1tva:D, 5tzv:D, 5u2r:D, 5u2s:D, 5u2t:D, 5u8g:D, 5u8h:D, 5u8i:D, 5u9h:D, 4uaw:D, 4uay:D, 4uaz:D, 4ub1:D, 4ub2:D, 4ub3:D, 4ub4:D, 4ub5:D, 4ubb:D, 4ubc:D, 5ugn:D, 5ugo:D, 5ugp:D, 6uok:E, 6uok:D, 6uol:D, 6uom:D, 5v1f:D, 5v1g:D, 5v1h:D, 5v1i:D, 5v1j:D, 5v1n:D, 5v1o:D, 5v1p:D, 5v1r:D, 5vez:D, 8vf8:D, 8vf9:D, 8vfa:D, 8vfb:D, 8vfc:D, 8vfd:D, 8vfe:D, 8vff:D, 8vfg:D, 8vfh:D, 8vfi:D, 8vfj:D, 5vrw:D, 5vrx:D, 5vry:D, 5vrz:D, 5vs0:D, 5vs1:D, 5vs2:D, 5vs3:D, 5vs4:D, 6w2m:D, 5wnx:D, 5wny:D, 5wnz:D, 5wo0:D, 4ymm:D, 4ymn:D, 4ymo:D, 4yn4:D, 4z6c:D, 4z6d:D, 4z6e:D, 4z6f:D, 1zjm:D, 1zjn:D)
    gtcgg
    		 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 15458631
    2676 1tva:A
    (2.6)    		 BS01 >1tva:T (identical to 6cr3:T, 6cr4:T, 6cr5:T, 6cr6:T, 6cr7:T, 6cr8:T, 6cr9:T, 6crb:T, 6crc:T, 4phe:T, 4php:T, 3tfr:T, 3tfs:T)
    ccgactgcgcatcagc
    		 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 15458631
    2677 1tva:A
    (2.6)    		 BS02 >1tva:P (identical to 4kle:P, 4klf:P, 4klg:P, 4klh:P, 4kli:P, 4klj:P, 4kll:P, 4klm:P, 4klo:P, 4nm1:P, 4o9m:C, 2p66:C, 4ph5:P, 6ph5:P, 7rbi:P, 7rbj:P, 7rbk:P, 7rbl:P, 7rbm:P, 7rbn:P, 7rbo:P, 4rpy:P, 4rpz:P, 4rq0:P, 4rq1:P, 4rq2:P, 1tv9:P, 5u9h:P, 5ugn:P, 5ugo:P)
    gctgatgcgcc
    		 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 15458631
    2678 1tva:A
    (2.6)    		 BS03 >1tva:D (identical to 6bel:D, 6bem:D, 5bol:D, 5bom:D, 1bpx:D, 1bpy:D, 1bpz:D, 5bpc:D, 6bte:D, 6btf:D, 3c2k:D, 3c2l:D, 3c2m:D, 6cly:D, 6cpq:D, 6cr3:D, 6cr4:D, 6cr5:D, 6cr6:D, 6cr7:D, 6cr8:D, 6cr9:D, 6crb:D, 6crc:D, 6crh:D, 6cti:D, 6ctj:D, 6ctk:D, 6ctl:D, 6ctm:D, 6ctn:D, 6cto:D, 6ctp:D, 6ctq:D, 6ctr:D, 6ctt:D, 6ctu:D, 6ctv:D, 6ctw:D, 6ctx:D, 6cu9:D, 6cua:D, 6cub:D, 5db6:D, 5db7:D, 5db8:D, 5db9:D, 5dba:D, 5dbb:D, 5dbc:D, 6dia:D, 6dic:D, 4do9:D, 4doa:D, 4dob:D, 4doc:D, 6e3r:D, 6e3v:D, 6e3w:D, 6e3x:D, 5eoz:D, 4f5n:D, 4f5o:D, 4f5p:D, 4f5q:D, 4f5r:D, 4f5r:C, 2fmp:D, 2fmq:D, 2fms:D, 6g2q:D, 3gdx:D, 4gxi:D, 4gxj:D, 4gxk:D, 5hhh:D, 5hhi:D, 2i9g:D, 2iso:D, 2isp:D, 3isb:D, 3isc:D, 3isd:D, 5j0o:D, 5j0p:D, 5j0q:D, 5j0r:D, 5j0s:D, 5j0t:D, 5j0u:D, 5j0w:D, 5j0x:D, 5j0y:D, 5j29:D, 5j2a:D, 5j2b:D, 5j2c:D, 5j2d:D, 5j2e:D, 5j2f:D, 5j2g:D, 5j2h:D, 5j2i:D, 5j2j:D, 5j2k:D, 3jpn:D, 3jpo:D, 3jpp:D, 3jpq:D, 3jpr:D, 3jps:D, 3jpt:D, 4jwm:D, 4jwn:D, 7k96:D, 7k97:D, 4kld:D, 4kle:D, 4klf:D, 4klg:D, 4klh:D, 4kli:D, 4klj:D, 4kll:D, 4klm:D, 4klo:D, 4klq:D, 4kls:D, 4klt:D, 4klu:D, 3lk9:D, 4lvs:D, 4m2y:D, 4m47:D, 4m9g:D, 4m9h:D, 4m9j:D, 4m9l:D, 4m9n:D, 3mby:D, 4mf2:D, 4mf8:D, 4mfa:D, 4mfc:D, 4mff:D, 1mq2:D, 1mq3:D, 6mr7:D, 6mr8:D, 7mz0:D, 7mz1:D, 7mz2:D, 7mz3:D, 7mz4:D, 7mz8:D, 6n2r:D, 6n2s:D, 6n2t:D, 6nkr:D, 6nks:D, 6nkt:D, 4nlk:D, 4nln:D, 4nlz:D, 4nm1:D, 4nm2:D, 4nxz:D, 4ny8:D, 4o5c:D, 4o5e:D, 4o5k:D, 4o9m:D, 4p2h:D, 4pgq:D, 4pgx:D, 4pgy:D, 4ph5:D, 4pha:D, 4phd:D, 4phe:D, 4php:D, 6ph5:D, 6ph6:D, 6pkz:D, 4ppx:D, 2pxi:D, 4r63:D, 4r64:D, 4r65:D, 4r66:D, 7rbe:D, 7rbf:D, 7rbg:D, 7rbh:D, 7rbi:D, 7rbj:D, 7rbk:D, 7rbl:D, 7rbm:D, 7rbn:D, 7rbo:D, 3rh4:D, 3rh5:D, 3rh6:D, 3rje:D, 3rjf:D, 3rjg:D, 3rjh:D, 3rji:D, 3rjj:D, 3rjk:D, 4rpx:D, 4rpy:D, 4rpz:D, 4rq0:D, 4rq1:D, 4rq2:D, 4rq3:D, 4rq4:D, 4rq5:D, 4rq6:D, 4rq7:D, 4rq8:D, 4rt2:D, 4rt3:D, 7s9j:D, 7s9k:D, 7s9l:D, 7s9m:D, 7s9n:D, 7s9o:D, 7s9p:D, 7s9q:D, 5tb8:D, 5tb9:D, 5tba:D, 5tbb:D, 5tbc:D, 3tfr:D, 3tfs:D, 1tv9:D, 5tzv:D, 5u2r:D, 5u2s:D, 5u2t:D, 5u8g:D, 5u8h:D, 5u8i:D, 5u9h:D, 4uaw:D, 4uay:D, 4uaz:D, 4ub1:D, 4ub2:D, 4ub3:D, 4ub4:D, 4ub5:D, 4ubb:D, 4ubc:D, 5ugn:D, 5ugo:D, 5ugp:D, 6uok:E, 6uok:D, 6uol:D, 6uom:D, 5v1f:D, 5v1g:D, 5v1h:D, 5v1i:D, 5v1j:D, 5v1n:D, 5v1o:D, 5v1p:D, 5v1r:D, 5vez:D, 8vf8:D, 8vf9:D, 8vfa:D, 8vfb:D, 8vfc:D, 8vfd:D, 8vfe:D, 8vff:D, 8vfg:D, 8vfh:D, 8vfi:D, 8vfj:D, 5vrw:D, 5vrx:D, 5vry:D, 5vrz:D, 5vs0:D, 5vs1:D, 5vs2:D, 5vs3:D, 5vs4:D, 6w2m:D, 5wnx:D, 5wny:D, 5wnz:D, 5wo0:D, 4ymm:D, 4ymn:D, 4ymo:D, 4yn4:D, 4z6c:D, 4z6d:D, 4z6e:D, 4z6f:D, 1zjm:D, 1zjn:D)
    gtcgg
    		 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 15458631
    2679 1tw8:A
    (2.8)    		 BS01 >1tw8:E (identical to 1tw8:F, 1tw8:G, 1tw8:H, 1tx3:E, 1tx3:F, 1tx3:G, 1tx3:H)
    gccggtcgaccgg
    		 3.1.21.4 GO:0003677 ... P17743 15491133 PDBbind: Kd=1.14nM
    2680 1tw8:A
    (2.8)    		 BS02 >1tw8:F (identical to 1tw8:E, 1tw8:G, 1tw8:H, 1tx3:E, 1tx3:F, 1tx3:G, 1tx3:H)
    gccggtcgaccgg
    		 3.1.21.4 GO:0003677 ... P17743 15491133 PDBbind: Kd=1.14nM
    2681 1tw8:B
    (2.8)    		 BS01 >1tw8:E (identical to 1tw8:F, 1tw8:G, 1tw8:H, 1tx3:E, 1tx3:F, 1tx3:G, 1tx3:H)
    gccggtcgaccgg
    		 3.1.21.4 GO:0003677 ... P17743 15491133 PDBbind: Kd=1.14nM
    2682 1tw8:B
    (2.8)    		 BS02 >1tw8:F (identical to 1tw8:E, 1tw8:G, 1tw8:H, 1tx3:E, 1tx3:F, 1tx3:G, 1tx3:H)
    gccggtcgaccgg
    		 3.1.21.4 GO:0003677 ... P17743 15491133 PDBbind: Kd=1.14nM
    2683 1tw8:C
    (2.8)    		 BS01 >1tw8:G (identical to 1tw8:E, 1tw8:F, 1tw8:H, 1tx3:E, 1tx3:F, 1tx3:G, 1tx3:H)
    gccggtcgaccgg
    		 3.1.21.4 GO:0003677 ... P17743 15491133 PDBbind: Kd=1.14nM
    2684 1tw8:C
    (2.8)    		 BS02 >1tw8:H (identical to 1tw8:E, 1tw8:F, 1tw8:G, 1tx3:E, 1tx3:F, 1tx3:G, 1tx3:H)
    gccggtcgaccgg
    		 3.1.21.4 GO:0003677 ... P17743 15491133 PDBbind: Kd=1.14nM
    2685 1tw8:D
    (2.8)    		 BS01 >1tw8:G (identical to 1tw8:E, 1tw8:F, 1tw8:H, 1tx3:E, 1tx3:F, 1tx3:G, 1tx3:H)
    gccggtcgaccgg
    		 3.1.21.4 GO:0003677 ... P17743 15491133 PDBbind: Kd=1.14nM
    2686 1tw8:D
    (2.8)    		 BS02 >1tw8:H (identical to 1tw8:E, 1tw8:F, 1tw8:G, 1tx3:E, 1tx3:F, 1tx3:G, 1tx3:H)
    gccggtcgaccgg
    		 3.1.21.4 GO:0003677 ... P17743 15491133 PDBbind: Kd=1.14nM
    2687 1tx3:A
    (2.5)    		 BS01 >1tx3:E (identical to 1tw8:E, 1tw8:F, 1tw8:G, 1tw8:H, 1tx3:F, 1tx3:G, 1tx3:H)
    gccggtcgaccgg
    		 3.1.21.4 GO:0003677 ... P17743 15491133
    2688 1tx3:A
    (2.5)    		 BS02 >1tx3:F (identical to 1tw8:E, 1tw8:F, 1tw8:G, 1tw8:H, 1tx3:E, 1tx3:G, 1tx3:H)
    gccggtcgaccgg
    		 3.1.21.4 GO:0003677 ... P17743 15491133
    2689 1tx3:B
    (2.5)    		 BS01 >1tx3:E (identical to 1tw8:E, 1tw8:F, 1tw8:G, 1tw8:H, 1tx3:F, 1tx3:G, 1tx3:H)
    gccggtcgaccgg
    		 3.1.21.4 GO:0003677 ... P17743 15491133
    2690 1tx3:B
    (2.5)    		 BS02 >1tx3:F (identical to 1tw8:E, 1tw8:F, 1tw8:G, 1tw8:H, 1tx3:E, 1tx3:G, 1tx3:H)
    gccggtcgaccgg
    		 3.1.21.4 GO:0003677 ... P17743 15491133
    2691 1tx3:C
    (2.5)    		 BS01 >1tx3:G (identical to 1tw8:E, 1tw8:F, 1tw8:G, 1tw8:H, 1tx3:E, 1tx3:F, 1tx3:H)
    gccggtcgaccgg
    		 3.1.21.4 GO:0003677 ... P17743 15491133
    2692 1tx3:C
    (2.5)    		 BS02 >1tx3:H (identical to 1tw8:E, 1tw8:F, 1tw8:G, 1tw8:H, 1tx3:E, 1tx3:F, 1tx3:G)
    gccggtcgaccgg
    		 3.1.21.4 GO:0003677 ... P17743 15491133
    2693 1tx3:D
    (2.5)    		 BS01 >1tx3:G (identical to 1tw8:E, 1tw8:F, 1tw8:G, 1tw8:H, 1tx3:E, 1tx3:F, 1tx3:H)
    gccggtcgaccgg
    		 3.1.21.4 GO:0003677 ... P17743 15491133
    2694 1tx3:D
    (2.5)    		 BS02 >1tx3:H (identical to 1tw8:E, 1tw8:F, 1tw8:G, 1tw8:H, 1tx3:E, 1tx3:F, 1tx3:G)
    gccggtcgaccgg
    		 3.1.21.4 GO:0003677 ... P17743 15491133
    2695 1u0c:A
    (2.5)    		 BS01 >1u0c:C
    gctaaacgtcgtgagacagttacg
    		 3.1.-.- GO:0004519 ... P05725 15313605 PDBbind: Kd=25nM
    2696 1u0c:A
    (2.5)    		 BS02 >1u0c:D
    cgtaactgtctcacgacgtttagc
    		 3.1.-.- GO:0004519 ... P05725 15313605 PDBbind: Kd=25nM
    2697 1u0c:B
    (2.5)    		 BS01 >1u0c:C
    gctaaacgtcgtgagacagttacg
    		 3.1.-.- GO:0004519 ... P05725 15313605 PDBbind: Kd=25nM
    2698 1u0c:B
    (2.5)    		 BS02 >1u0c:D
    cgtaactgtctcacgacgtttagc
    		 3.1.-.- GO:0004519 ... P05725 15313605 PDBbind: Kd=25nM
    2699 1u0d:A
    (2.9)    		 BS01 >1u0d:C
    gcgaaacgtcgtgagacagttccg
    		 3.1.-.- GO:0004519 ... P05725 15313605 PDBbind: Kd=2.0nM
    2700 1u0d:A
    (2.9)    		 BS02 >1u0d:D
    cggaactgtctcacgacgtttcgc
    		 3.1.-.- GO:0004519 ... P05725 15313605 PDBbind: Kd=2.0nM
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218