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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 45686 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • The sequence is converted from residues with experimentally determined coordinates in the structure; residues not observed in the 3D structure are excluded.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (resolution)     		Site
    #     		DNA
    sequence         		EC
    number     		GO
    terms     		UniProt PubMed Binding
    affinity
    901 1ic8:B
    (2.6)    		 BS02 >1ic8:F
    tctggtgaattattaaccaag
    		 ? GO:0001889 ... P20823 12453420
    902 1id3:A
    (3.1)    		 BS01 >1id3:I (identical to 3c1b:I, 3c1b:J, 3c1c:I, 3c1c:J, 5e5a:I, 5e5a:J, 1eqz:I, 1eqz:J, 1f66:I, 1f66:J, 1id3:J, 4kud:I, 4kud:J, 3kwq:I, 3kwq:J, 3kxb:I, 3kxb:J, 1m18:I, 1m18:J, 1m19:I, 1m19:J, 1m1a:I, 1m1a:J, 2nqb:I, 2nqb:J, 1p34:I, 1p34:J, 1p3a:I, 1p3a:J, 1p3b:I, 1p3b:J, 1p3f:I, 1p3f:J, 1p3g:I, 1p3g:J, 1p3i:I, 1p3i:J, 1p3k:I, 1p3k:J, 1p3l:I, 1p3l:J, 1p3m:I, 1p3m:J, 1p3o:I, 1p3o:J, 1p3p:I, 1p3p:J, 1s32:I, 1s32:J, 7yrd:I, 7yrd:J, 7yrg:I, 7yrg:J, 1zla:I, 1zla:J)
    atcaatatccacctgcagattctaccaaaagtgtatttggaaactgctcc
atcaaaaggcatgttcagcggaattccgctgaacatgccttttgatggag
cagtttccaaatacacttttggtagaatctgcaggtggatattgat
    		 ? GO:0000500 ... P61830 11566884
    903 1id3:A
    (3.1)    		 BS02 >1id3:J (identical to 3c1b:I, 3c1b:J, 3c1c:I, 3c1c:J, 5e5a:I, 5e5a:J, 1eqz:I, 1eqz:J, 1f66:I, 1f66:J, 1id3:I, 4kud:I, 4kud:J, 3kwq:I, 3kwq:J, 3kxb:I, 3kxb:J, 1m18:I, 1m18:J, 1m19:I, 1m19:J, 1m1a:I, 1m1a:J, 2nqb:I, 2nqb:J, 1p34:I, 1p34:J, 1p3a:I, 1p3a:J, 1p3b:I, 1p3b:J, 1p3f:I, 1p3f:J, 1p3g:I, 1p3g:J, 1p3i:I, 1p3i:J, 1p3k:I, 1p3k:J, 1p3l:I, 1p3l:J, 1p3m:I, 1p3m:J, 1p3o:I, 1p3o:J, 1p3p:I, 1p3p:J, 1s32:I, 1s32:J, 7yrd:I, 7yrd:J, 7yrg:I, 7yrg:J, 1zla:I, 1zla:J)
    atcaatatccacctgcagattctaccaaaagtgtatttggaaactgctcc
atcaaaaggcatgttcagcggaattccgctgaacatgccttttgatggag
cagtttccaaatacacttttggtagaatctgcaggtggatattgat
    		 ? GO:0000500 ... P61830 11566884
    904 1id3:B
    (3.1)    		 BS01 >1id3:I (identical to 3c1b:I, 3c1b:J, 3c1c:I, 3c1c:J, 5e5a:I, 5e5a:J, 1eqz:I, 1eqz:J, 1f66:I, 1f66:J, 1id3:J, 4kud:I, 4kud:J, 3kwq:I, 3kwq:J, 3kxb:I, 3kxb:J, 1m18:I, 1m18:J, 1m19:I, 1m19:J, 1m1a:I, 1m1a:J, 2nqb:I, 2nqb:J, 1p34:I, 1p34:J, 1p3a:I, 1p3a:J, 1p3b:I, 1p3b:J, 1p3f:I, 1p3f:J, 1p3g:I, 1p3g:J, 1p3i:I, 1p3i:J, 1p3k:I, 1p3k:J, 1p3l:I, 1p3l:J, 1p3m:I, 1p3m:J, 1p3o:I, 1p3o:J, 1p3p:I, 1p3p:J, 1s32:I, 1s32:J, 7yrd:I, 7yrd:J, 7yrg:I, 7yrg:J, 1zla:I, 1zla:J)
    atcaatatccacctgcagattctaccaaaagtgtatttggaaactgctcc
atcaaaaggcatgttcagcggaattccgctgaacatgccttttgatggag
cagtttccaaatacacttttggtagaatctgcaggtggatattgat
    		 ? GO:0000500 ... P02309 11566884
    905 1id3:B
    (3.1)    		 BS02 >1id3:J (identical to 3c1b:I, 3c1b:J, 3c1c:I, 3c1c:J, 5e5a:I, 5e5a:J, 1eqz:I, 1eqz:J, 1f66:I, 1f66:J, 1id3:I, 4kud:I, 4kud:J, 3kwq:I, 3kwq:J, 3kxb:I, 3kxb:J, 1m18:I, 1m18:J, 1m19:I, 1m19:J, 1m1a:I, 1m1a:J, 2nqb:I, 2nqb:J, 1p34:I, 1p34:J, 1p3a:I, 1p3a:J, 1p3b:I, 1p3b:J, 1p3f:I, 1p3f:J, 1p3g:I, 1p3g:J, 1p3i:I, 1p3i:J, 1p3k:I, 1p3k:J, 1p3l:I, 1p3l:J, 1p3m:I, 1p3m:J, 1p3o:I, 1p3o:J, 1p3p:I, 1p3p:J, 1s32:I, 1s32:J, 7yrd:I, 7yrd:J, 7yrg:I, 7yrg:J, 1zla:I, 1zla:J)
    atcaatatccacctgcagattctaccaaaagtgtatttggaaactgctcc
atcaaaaggcatgttcagcggaattccgctgaacatgccttttgatggag
cagtttccaaatacacttttggtagaatctgcaggtggatattgat
    		 ? GO:0000500 ... P02309 11566884
    906 1id3:C
    (3.1)    		 BS01 >1id3:I (identical to 3c1b:I, 3c1b:J, 3c1c:I, 3c1c:J, 5e5a:I, 5e5a:J, 1eqz:I, 1eqz:J, 1f66:I, 1f66:J, 1id3:J, 4kud:I, 4kud:J, 3kwq:I, 3kwq:J, 3kxb:I, 3kxb:J, 1m18:I, 1m18:J, 1m19:I, 1m19:J, 1m1a:I, 1m1a:J, 2nqb:I, 2nqb:J, 1p34:I, 1p34:J, 1p3a:I, 1p3a:J, 1p3b:I, 1p3b:J, 1p3f:I, 1p3f:J, 1p3g:I, 1p3g:J, 1p3i:I, 1p3i:J, 1p3k:I, 1p3k:J, 1p3l:I, 1p3l:J, 1p3m:I, 1p3m:J, 1p3o:I, 1p3o:J, 1p3p:I, 1p3p:J, 1s32:I, 1s32:J, 7yrd:I, 7yrd:J, 7yrg:I, 7yrg:J, 1zla:I, 1zla:J)
    atcaatatccacctgcagattctaccaaaagtgtatttggaaactgctcc
atcaaaaggcatgttcagcggaattccgctgaacatgccttttgatggag
cagtttccaaatacacttttggtagaatctgcaggtggatattgat
    		 ? GO:0000122 ... P04911 11566884
    907 1id3:C
    (3.1)    		 BS02 >1id3:J (identical to 3c1b:I, 3c1b:J, 3c1c:I, 3c1c:J, 5e5a:I, 5e5a:J, 1eqz:I, 1eqz:J, 1f66:I, 1f66:J, 1id3:I, 4kud:I, 4kud:J, 3kwq:I, 3kwq:J, 3kxb:I, 3kxb:J, 1m18:I, 1m18:J, 1m19:I, 1m19:J, 1m1a:I, 1m1a:J, 2nqb:I, 2nqb:J, 1p34:I, 1p34:J, 1p3a:I, 1p3a:J, 1p3b:I, 1p3b:J, 1p3f:I, 1p3f:J, 1p3g:I, 1p3g:J, 1p3i:I, 1p3i:J, 1p3k:I, 1p3k:J, 1p3l:I, 1p3l:J, 1p3m:I, 1p3m:J, 1p3o:I, 1p3o:J, 1p3p:I, 1p3p:J, 1s32:I, 1s32:J, 7yrd:I, 7yrd:J, 7yrg:I, 7yrg:J, 1zla:I, 1zla:J)
    atcaatatccacctgcagattctaccaaaagtgtatttggaaactgctcc
atcaaaaggcatgttcagcggaattccgctgaacatgccttttgatggag
cagtttccaaatacacttttggtagaatctgcaggtggatattgat
    		 ? GO:0000122 ... P04911 11566884
    908 1id3:D
    (3.1)    		 BS01 >1id3:I (identical to 3c1b:I, 3c1b:J, 3c1c:I, 3c1c:J, 5e5a:I, 5e5a:J, 1eqz:I, 1eqz:J, 1f66:I, 1f66:J, 1id3:J, 4kud:I, 4kud:J, 3kwq:I, 3kwq:J, 3kxb:I, 3kxb:J, 1m18:I, 1m18:J, 1m19:I, 1m19:J, 1m1a:I, 1m1a:J, 2nqb:I, 2nqb:J, 1p34:I, 1p34:J, 1p3a:I, 1p3a:J, 1p3b:I, 1p3b:J, 1p3f:I, 1p3f:J, 1p3g:I, 1p3g:J, 1p3i:I, 1p3i:J, 1p3k:I, 1p3k:J, 1p3l:I, 1p3l:J, 1p3m:I, 1p3m:J, 1p3o:I, 1p3o:J, 1p3p:I, 1p3p:J, 1s32:I, 1s32:J, 7yrd:I, 7yrd:J, 7yrg:I, 7yrg:J, 1zla:I, 1zla:J)
    atcaatatccacctgcagattctaccaaaagtgtatttggaaactgctcc
atcaaaaggcatgttcagcggaattccgctgaacatgccttttgatggag
cagtttccaaatacacttttggtagaatctgcaggtggatattgat
    		 ? GO:0000786 ... P02294 11566884
    909 1id3:E
    (3.1)    		 BS01 >1id3:I (identical to 3c1b:I, 3c1b:J, 3c1c:I, 3c1c:J, 5e5a:I, 5e5a:J, 1eqz:I, 1eqz:J, 1f66:I, 1f66:J, 1id3:J, 4kud:I, 4kud:J, 3kwq:I, 3kwq:J, 3kxb:I, 3kxb:J, 1m18:I, 1m18:J, 1m19:I, 1m19:J, 1m1a:I, 1m1a:J, 2nqb:I, 2nqb:J, 1p34:I, 1p34:J, 1p3a:I, 1p3a:J, 1p3b:I, 1p3b:J, 1p3f:I, 1p3f:J, 1p3g:I, 1p3g:J, 1p3i:I, 1p3i:J, 1p3k:I, 1p3k:J, 1p3l:I, 1p3l:J, 1p3m:I, 1p3m:J, 1p3o:I, 1p3o:J, 1p3p:I, 1p3p:J, 1s32:I, 1s32:J, 7yrd:I, 7yrd:J, 7yrg:I, 7yrg:J, 1zla:I, 1zla:J)
    atcaatatccacctgcagattctaccaaaagtgtatttggaaactgctcc
atcaaaaggcatgttcagcggaattccgctgaacatgccttttgatggag
cagtttccaaatacacttttggtagaatctgcaggtggatattgat
    		 ? GO:0000500 ... P61830 11566884
    910 1id3:E
    (3.1)    		 BS02 >1id3:J (identical to 3c1b:I, 3c1b:J, 3c1c:I, 3c1c:J, 5e5a:I, 5e5a:J, 1eqz:I, 1eqz:J, 1f66:I, 1f66:J, 1id3:I, 4kud:I, 4kud:J, 3kwq:I, 3kwq:J, 3kxb:I, 3kxb:J, 1m18:I, 1m18:J, 1m19:I, 1m19:J, 1m1a:I, 1m1a:J, 2nqb:I, 2nqb:J, 1p34:I, 1p34:J, 1p3a:I, 1p3a:J, 1p3b:I, 1p3b:J, 1p3f:I, 1p3f:J, 1p3g:I, 1p3g:J, 1p3i:I, 1p3i:J, 1p3k:I, 1p3k:J, 1p3l:I, 1p3l:J, 1p3m:I, 1p3m:J, 1p3o:I, 1p3o:J, 1p3p:I, 1p3p:J, 1s32:I, 1s32:J, 7yrd:I, 7yrd:J, 7yrg:I, 7yrg:J, 1zla:I, 1zla:J)
    atcaatatccacctgcagattctaccaaaagtgtatttggaaactgctcc
atcaaaaggcatgttcagcggaattccgctgaacatgccttttgatggag
cagtttccaaatacacttttggtagaatctgcaggtggatattgat
    		 ? GO:0000500 ... P61830 11566884
    911 1id3:F
    (3.1)    		 BS01 >1id3:I (identical to 3c1b:I, 3c1b:J, 3c1c:I, 3c1c:J, 5e5a:I, 5e5a:J, 1eqz:I, 1eqz:J, 1f66:I, 1f66:J, 1id3:J, 4kud:I, 4kud:J, 3kwq:I, 3kwq:J, 3kxb:I, 3kxb:J, 1m18:I, 1m18:J, 1m19:I, 1m19:J, 1m1a:I, 1m1a:J, 2nqb:I, 2nqb:J, 1p34:I, 1p34:J, 1p3a:I, 1p3a:J, 1p3b:I, 1p3b:J, 1p3f:I, 1p3f:J, 1p3g:I, 1p3g:J, 1p3i:I, 1p3i:J, 1p3k:I, 1p3k:J, 1p3l:I, 1p3l:J, 1p3m:I, 1p3m:J, 1p3o:I, 1p3o:J, 1p3p:I, 1p3p:J, 1s32:I, 1s32:J, 7yrd:I, 7yrd:J, 7yrg:I, 7yrg:J, 1zla:I, 1zla:J)
    atcaatatccacctgcagattctaccaaaagtgtatttggaaactgctcc
atcaaaaggcatgttcagcggaattccgctgaacatgccttttgatggag
cagtttccaaatacacttttggtagaatctgcaggtggatattgat
    		 ? GO:0000500 ... P02309 11566884
    912 1id3:F
    (3.1)    		 BS02 >1id3:J (identical to 3c1b:I, 3c1b:J, 3c1c:I, 3c1c:J, 5e5a:I, 5e5a:J, 1eqz:I, 1eqz:J, 1f66:I, 1f66:J, 1id3:I, 4kud:I, 4kud:J, 3kwq:I, 3kwq:J, 3kxb:I, 3kxb:J, 1m18:I, 1m18:J, 1m19:I, 1m19:J, 1m1a:I, 1m1a:J, 2nqb:I, 2nqb:J, 1p34:I, 1p34:J, 1p3a:I, 1p3a:J, 1p3b:I, 1p3b:J, 1p3f:I, 1p3f:J, 1p3g:I, 1p3g:J, 1p3i:I, 1p3i:J, 1p3k:I, 1p3k:J, 1p3l:I, 1p3l:J, 1p3m:I, 1p3m:J, 1p3o:I, 1p3o:J, 1p3p:I, 1p3p:J, 1s32:I, 1s32:J, 7yrd:I, 7yrd:J, 7yrg:I, 7yrg:J, 1zla:I, 1zla:J)
    atcaatatccacctgcagattctaccaaaagtgtatttggaaactgctcc
atcaaaaggcatgttcagcggaattccgctgaacatgccttttgatggag
cagtttccaaatacacttttggtagaatctgcaggtggatattgat
    		 ? GO:0000500 ... P02309 11566884
    913 1id3:G
    (3.1)    		 BS01 >1id3:I (identical to 3c1b:I, 3c1b:J, 3c1c:I, 3c1c:J, 5e5a:I, 5e5a:J, 1eqz:I, 1eqz:J, 1f66:I, 1f66:J, 1id3:J, 4kud:I, 4kud:J, 3kwq:I, 3kwq:J, 3kxb:I, 3kxb:J, 1m18:I, 1m18:J, 1m19:I, 1m19:J, 1m1a:I, 1m1a:J, 2nqb:I, 2nqb:J, 1p34:I, 1p34:J, 1p3a:I, 1p3a:J, 1p3b:I, 1p3b:J, 1p3f:I, 1p3f:J, 1p3g:I, 1p3g:J, 1p3i:I, 1p3i:J, 1p3k:I, 1p3k:J, 1p3l:I, 1p3l:J, 1p3m:I, 1p3m:J, 1p3o:I, 1p3o:J, 1p3p:I, 1p3p:J, 1s32:I, 1s32:J, 7yrd:I, 7yrd:J, 7yrg:I, 7yrg:J, 1zla:I, 1zla:J)
    atcaatatccacctgcagattctaccaaaagtgtatttggaaactgctcc
atcaaaaggcatgttcagcggaattccgctgaacatgccttttgatggag
cagtttccaaatacacttttggtagaatctgcaggtggatattgat
    		 ? GO:0000122 ... P04911 11566884
    914 1id3:G
    (3.1)    		 BS02 >1id3:J (identical to 3c1b:I, 3c1b:J, 3c1c:I, 3c1c:J, 5e5a:I, 5e5a:J, 1eqz:I, 1eqz:J, 1f66:I, 1f66:J, 1id3:I, 4kud:I, 4kud:J, 3kwq:I, 3kwq:J, 3kxb:I, 3kxb:J, 1m18:I, 1m18:J, 1m19:I, 1m19:J, 1m1a:I, 1m1a:J, 2nqb:I, 2nqb:J, 1p34:I, 1p34:J, 1p3a:I, 1p3a:J, 1p3b:I, 1p3b:J, 1p3f:I, 1p3f:J, 1p3g:I, 1p3g:J, 1p3i:I, 1p3i:J, 1p3k:I, 1p3k:J, 1p3l:I, 1p3l:J, 1p3m:I, 1p3m:J, 1p3o:I, 1p3o:J, 1p3p:I, 1p3p:J, 1s32:I, 1s32:J, 7yrd:I, 7yrd:J, 7yrg:I, 7yrg:J, 1zla:I, 1zla:J)
    atcaatatccacctgcagattctaccaaaagtgtatttggaaactgctcc
atcaaaaggcatgttcagcggaattccgctgaacatgccttttgatggag
cagtttccaaatacacttttggtagaatctgcaggtggatattgat
    		 ? GO:0000122 ... P04911 11566884
    915 1id3:H
    (3.1)    		 BS01 >1id3:I (identical to 3c1b:I, 3c1b:J, 3c1c:I, 3c1c:J, 5e5a:I, 5e5a:J, 1eqz:I, 1eqz:J, 1f66:I, 1f66:J, 1id3:J, 4kud:I, 4kud:J, 3kwq:I, 3kwq:J, 3kxb:I, 3kxb:J, 1m18:I, 1m18:J, 1m19:I, 1m19:J, 1m1a:I, 1m1a:J, 2nqb:I, 2nqb:J, 1p34:I, 1p34:J, 1p3a:I, 1p3a:J, 1p3b:I, 1p3b:J, 1p3f:I, 1p3f:J, 1p3g:I, 1p3g:J, 1p3i:I, 1p3i:J, 1p3k:I, 1p3k:J, 1p3l:I, 1p3l:J, 1p3m:I, 1p3m:J, 1p3o:I, 1p3o:J, 1p3p:I, 1p3p:J, 1s32:I, 1s32:J, 7yrd:I, 7yrd:J, 7yrg:I, 7yrg:J, 1zla:I, 1zla:J)
    atcaatatccacctgcagattctaccaaaagtgtatttggaaactgctcc
atcaaaaggcatgttcagcggaattccgctgaacatgccttttgatggag
cagtttccaaatacacttttggtagaatctgcaggtggatattgat
    		 ? GO:0000786 ... P02294 11566884
    916 1id3:H
    (3.1)    		 BS02 >1id3:J (identical to 3c1b:I, 3c1b:J, 3c1c:I, 3c1c:J, 5e5a:I, 5e5a:J, 1eqz:I, 1eqz:J, 1f66:I, 1f66:J, 1id3:I, 4kud:I, 4kud:J, 3kwq:I, 3kwq:J, 3kxb:I, 3kxb:J, 1m18:I, 1m18:J, 1m19:I, 1m19:J, 1m1a:I, 1m1a:J, 2nqb:I, 2nqb:J, 1p34:I, 1p34:J, 1p3a:I, 1p3a:J, 1p3b:I, 1p3b:J, 1p3f:I, 1p3f:J, 1p3g:I, 1p3g:J, 1p3i:I, 1p3i:J, 1p3k:I, 1p3k:J, 1p3l:I, 1p3l:J, 1p3m:I, 1p3m:J, 1p3o:I, 1p3o:J, 1p3p:I, 1p3p:J, 1s32:I, 1s32:J, 7yrd:I, 7yrd:J, 7yrg:I, 7yrg:J, 1zla:I, 1zla:J)
    atcaatatccacctgcagattctaccaaaagtgtatttggaaactgctcc
atcaaaaggcatgttcagcggaattccgctgaacatgccttttgatggag
cagtttccaaatacacttttggtagaatctgcaggtggatattgat
    		 ? GO:0000786 ... P02294 11566884
    917 1if1:A
    (3.0)    		 BS01 >1if1:C (identical to 1if1:D)
    gagaagtgaaagtactttcacttctc
    		 ? GO:0000976 ... P15314 9422515
    918 1if1:B
    (3.0)    		 BS01 >1if1:D (identical to 1if1:C)
    gagaagtgaaagtactttcacttctc
    		 ? GO:0000976 ... P15314 9422515
    919 1ig4:A
    (-1.00)    		 BS01 >1ig4:B (identical to 1ig4:C)
    gtatccggatac
    		 ? GO:0003677 ... Q9UIS9 11371345
    920 1ig4:A
    (-1.00)    		 BS02 >1ig4:C (identical to 1ig4:B)
    gtatccggatac
    		 ? GO:0003677 ... Q9UIS9 11371345
    921 1ig7:A
    (2.2)    		 BS01 >1ig7:B
    cactaattgaagg
    		 ? GO:0000981 ... P13297 11580277
    922 1ig7:A
    (2.2)    		 BS02 >1ig7:C
    tccttcaattagtgac
    		 ? GO:0000981 ... P13297 11580277
    923 1ig9:A
    (2.6)    		 BS01 >1ig9:T (identical to 3cfp:T, 3cq8:T, 6isf:D, 6isf:F, 4khq:T, 4khs:T, 4khu:T, 4khw:T, 4ki4:T, 4ki6:T)
    acaggtaagcagtccgcg
    		 2.7.7.7
    3.1.11.-    		 GO:0000166 ... Q38087 11389835
    924 1ig9:A
    (2.6)    		 BS02 >1ig9:P (identical to 3cfp:P, 3cq8:P, 4khq:P, 4khs:P, 4khu:P, 4khw:P, 4khy:P, 4ki4:P, 4ki6:P, 1q9y:P)
    gcggactgcttacc
    		 2.7.7.7
    3.1.11.-    		 GO:0000166 ... Q38087 11389835
    925 1ign:A
    (2.25)    		 BS01 >1ign:C
    ccgcacacccacacaccag
    		 ? GO:0000723 ... P11938 8620531 PDBbind: Kd=13pM
    926 1ign:A
    (2.25)    		 BS02 >1ign:D (identical to 1ign:F)
    cctggtgtgtgggtgtgcg
    		 ? GO:0000723 ... P11938 8620531 PDBbind: Kd=13pM
    927 1ign:B
    (2.25)    		 BS01 >1ign:E
    cgcacacccacacaccag
    		 ? GO:0000723 ... P11938 8620531 PDBbind: Kd=13pM
    928 1ign:B
    (2.25)    		 BS02 >1ign:F (identical to 1ign:D)
    cctggtgtgtgggtgtgcg
    		 ? GO:0000723 ... P11938 8620531 PDBbind: Kd=13pM
    929 1ihf:A
    (2.5)    		 BS01 >1ihf:C (identical to 2iie:C, 2iif:C, 1owf:C)
    cggtgcaacaaattgataagcaatgcttttttggc
    		 ? GO:0000976 ... P0A6X7 8980235
    930 1ihf:A
    (2.5)    		 BS02 >1ihf:D (identical to 2ht0:E, 2iie:D, 2iif:D, 1ouz:D, 1owf:D, 1owg:D)
    ggccaaaaaagcatt
    		 ? GO:0000976 ... P0A6X7 8980235
    931 1ihf:A
    (2.5)    		 BS03 >1ihf:E (identical to 2ht0:F, 2iie:E, 2iif:E, 1owf:E)
    gcttatcaatttgttgcacc
    		 ? GO:0000976 ... P0A6X7 8980235
    932 1ihf:B
    (2.5)    		 BS01 >1ihf:C (identical to 2iie:C, 2iif:C, 1owf:C)
    cggtgcaacaaattgataagcaatgcttttttggc
    		 ? GO:0003677 ... P0A6Y1 8980235
    933 1ihf:B
    (2.5)    		 BS02 >1ihf:E (identical to 2ht0:F, 2iie:E, 2iif:E, 1owf:E)
    gcttatcaatttgttgcacc
    		 ? GO:0003677 ... P0A6Y1 8980235
    934 1ijs:P
    (3.25)    		 BS01 >1ijs:N
    ccaccccaa
    		 ? GO:0005198 ... P17455 8918534
    935 1ijw:C
    (2.4)    		 BS01 >1ijw:A (identical to 1hcr:B)
    tgtttttgataaga
    		 ? GO:0000150 ... P03013 11847127 PDBbind: Kd=3.8nM
    936 1ijw:C
    (2.4)    		 BS02 >1ijw:B (identical to 1jj6:B, 1jj8:B)
    atcttatcaaaaac
    		 ? GO:0000150 ... P03013 11847127 PDBbind: Kd=3.8nM
    937 1imh:C
    (2.86)    		 BS01 >1imh:A (identical to 1owr:A, 1owr:C, 1owr:E, 1owr:G, 8ow4:W, 8ow4:G)
    ttgctggaaaaatag
    		 ? GO:0000978 ... O94916 11780147 PDBbind: Kd=30nM
    938 1imh:C
    (2.86)    		 BS02 >1imh:B (identical to 1owr:B, 1owr:D, 1owr:F, 1owr:H, 8ow4:C, 8ow4:H)
    aactatttttccagc
    		 ? GO:0000978 ... O94916 11780147 PDBbind: Kd=30nM
    939 1imh:D
    (2.86)    		 BS01 >1imh:A (identical to 1owr:A, 1owr:C, 1owr:E, 1owr:G, 8ow4:W, 8ow4:G)
    ttgctggaaaaatag
    		 ? GO:0000978 ... O94916 11780147 PDBbind: Kd=30nM
    940 1io4:A
    (3.0)    		 BS01 >1io4:E (identical to 1hjb:G, 1hjb:I)
    gaagatttccaaactctgtggttgcg
    		 ? GO:0003700 ... P17676 11257229 PDBbind: Kd=7.56nM
    941 1io4:A
    (3.0)    		 BS02 >1io4:F (identical to 1hjb:H, 1hjb:J)
    ccgcaaccacagagtttggaaatctt
    		 ? GO:0003700 ... P17676 11257229 PDBbind: Kd=7.56nM
    942 1io4:B
    (3.0)    		 BS01 >1io4:E (identical to 1hjb:G, 1hjb:I)
    gaagatttccaaactctgtggttgcg
    		 ? GO:0003700 ... P17676 11257229 PDBbind: Kd=7.56nM
    943 1io4:B
    (3.0)    		 BS02 >1io4:F (identical to 1hjb:H, 1hjb:J)
    ccgcaaccacagagtttggaaatctt
    		 ? GO:0003700 ... P17676 11257229 PDBbind: Kd=7.56nM
    944 1io4:C
    (3.0)    		 BS01 >1io4:E (identical to 1hjb:G, 1hjb:I)
    gaagatttccaaactctgtggttgcg
    		 ? GO:0003677 ... Q03347 11257229 PDBbind: Kd=7.56nM
    945 1io4:C
    (3.0)    		 BS02 >1io4:F (identical to 1hjb:H, 1hjb:J)
    ccgcaaccacagagtttggaaatctt
    		 ? GO:0003677 ... Q03347 11257229 PDBbind: Kd=7.56nM
    946 1ipp:A
    (2.2)    		 BS01 >1ipp:C (identical to 1a74:C, 1a74:D, 1cyq:C, 1cyq:D, 1cz0:C, 1cz0:D, 1ipp:D, 2o6m:C, 2o6m:D, 8vmo:C, 8vmo:D, 8vmp:C, 8vmp:D, 8vmq:C, 8vmq:D, 8vmr:C, 8vmr:D, 8vms:C, 8vms:D, 8vmt:C, 8vmt:D, 8vmu:C, 8vmu:D, 8vmw:C, 8vmw:D, 8vmx:C, 8vmx:D, 8vmy:C, 8vmy:D, 8vmz:C, 8vmz:D, 8vn0:C, 8vn0:D, 8vn1:C, 8vn1:D, 8vn2:C, 8vn2:D, 8vn5:C, 8vn5:D, 8vn6:C, 8vn6:D, 8vn8:C, 8vn8:D, 8vn9:C, 8vn9:D, 8vna:C, 8vna:D, 8vne:C, 8vne:D, 8vnf:C, 8vnf:D, 8vng:C, 8vng:D, 8vnh:C, 8vnh:D, 8vnj:C, 8vnj:D, 8vnk:C, 8vnk:D, 8vnm:C, 8vnm:D, 8vnp:C, 8vnp:D, 8vnq:C, 8vnq:D, 8vnr:C, 8vnr:D, 8vnu:C, 8vnu:D)
    ttgactctcttaagagagtca
    		 3.1.-.- GO:0004519 ... Q94702 9665136
    947 1ipp:A
    (2.2)    		 BS02 >1ipp:D (identical to 1a74:C, 1a74:D, 1cyq:C, 1cyq:D, 1cz0:C, 1cz0:D, 1ipp:C, 2o6m:C, 2o6m:D, 8vmo:C, 8vmo:D, 8vmp:C, 8vmp:D, 8vmq:C, 8vmq:D, 8vmr:C, 8vmr:D, 8vms:C, 8vms:D, 8vmt:C, 8vmt:D, 8vmu:C, 8vmu:D, 8vmw:C, 8vmw:D, 8vmx:C, 8vmx:D, 8vmy:C, 8vmy:D, 8vmz:C, 8vmz:D, 8vn0:C, 8vn0:D, 8vn1:C, 8vn1:D, 8vn2:C, 8vn2:D, 8vn5:C, 8vn5:D, 8vn6:C, 8vn6:D, 8vn8:C, 8vn8:D, 8vn9:C, 8vn9:D, 8vna:C, 8vna:D, 8vne:C, 8vne:D, 8vnf:C, 8vnf:D, 8vng:C, 8vng:D, 8vnh:C, 8vnh:D, 8vnj:C, 8vnj:D, 8vnk:C, 8vnk:D, 8vnm:C, 8vnm:D, 8vnp:C, 8vnp:D, 8vnq:C, 8vnq:D, 8vnr:C, 8vnr:D, 8vnu:C, 8vnu:D)
    ttgactctcttaagagagtca
    		 3.1.-.- GO:0004519 ... Q94702 9665136
    948 1ipp:B
    (2.2)    		 BS01 >1ipp:C (identical to 1a74:C, 1a74:D, 1cyq:C, 1cyq:D, 1cz0:C, 1cz0:D, 1ipp:D, 2o6m:C, 2o6m:D, 8vmo:C, 8vmo:D, 8vmp:C, 8vmp:D, 8vmq:C, 8vmq:D, 8vmr:C, 8vmr:D, 8vms:C, 8vms:D, 8vmt:C, 8vmt:D, 8vmu:C, 8vmu:D, 8vmw:C, 8vmw:D, 8vmx:C, 8vmx:D, 8vmy:C, 8vmy:D, 8vmz:C, 8vmz:D, 8vn0:C, 8vn0:D, 8vn1:C, 8vn1:D, 8vn2:C, 8vn2:D, 8vn5:C, 8vn5:D, 8vn6:C, 8vn6:D, 8vn8:C, 8vn8:D, 8vn9:C, 8vn9:D, 8vna:C, 8vna:D, 8vne:C, 8vne:D, 8vnf:C, 8vnf:D, 8vng:C, 8vng:D, 8vnh:C, 8vnh:D, 8vnj:C, 8vnj:D, 8vnk:C, 8vnk:D, 8vnm:C, 8vnm:D, 8vnp:C, 8vnp:D, 8vnq:C, 8vnq:D, 8vnr:C, 8vnr:D, 8vnu:C, 8vnu:D)
    ttgactctcttaagagagtca
    		 3.1.-.- GO:0004519 ... Q94702 9665136
    949 1ipp:B
    (2.2)    		 BS02 >1ipp:D (identical to 1a74:C, 1a74:D, 1cyq:C, 1cyq:D, 1cz0:C, 1cz0:D, 1ipp:C, 2o6m:C, 2o6m:D, 8vmo:C, 8vmo:D, 8vmp:C, 8vmp:D, 8vmq:C, 8vmq:D, 8vmr:C, 8vmr:D, 8vms:C, 8vms:D, 8vmt:C, 8vmt:D, 8vmu:C, 8vmu:D, 8vmw:C, 8vmw:D, 8vmx:C, 8vmx:D, 8vmy:C, 8vmy:D, 8vmz:C, 8vmz:D, 8vn0:C, 8vn0:D, 8vn1:C, 8vn1:D, 8vn2:C, 8vn2:D, 8vn5:C, 8vn5:D, 8vn6:C, 8vn6:D, 8vn8:C, 8vn8:D, 8vn9:C, 8vn9:D, 8vna:C, 8vna:D, 8vne:C, 8vne:D, 8vnf:C, 8vnf:D, 8vng:C, 8vng:D, 8vnh:C, 8vnh:D, 8vnj:C, 8vnj:D, 8vnk:C, 8vnk:D, 8vnm:C, 8vnm:D, 8vnp:C, 8vnp:D, 8vnq:C, 8vnq:D, 8vnr:C, 8vnr:D, 8vnu:C, 8vnu:D)
    ttgactctcttaagagagtca
    		 3.1.-.- GO:0004519 ... Q94702 9665136
    950 1iu3:C
    (3.0)    		 BS01 >1iu3:A (identical to 1iu3:D, 1j3e:B)
    aaggatccaa
    		 ? GO:0003677 ... P0AFY8 14704346
    951 1iu3:C
    (3.0)    		 BS02 >1iu3:B (identical to 1iu3:E)
    ttggatcctt
    		 ? GO:0003677 ... P0AFY8 14704346
    952 1iu3:F
    (3.0)    		 BS01 >1iu3:D (identical to 1iu3:A, 1j3e:B)
    aaggatccaa
    		 ? GO:0003677 ... P0AFY8 14704346
    953 1iu3:F
    (3.0)    		 BS02 >1iu3:E (identical to 1iu3:B)
    ttggatcctt
    		 ? GO:0003677 ... P0AFY8 14704346
    954 1iv6:A
    (-1.00)    		 BS01 >1iv6:B (identical to 1vfc:B)
    gttagggttaggg
    		 ? N/A P54274 11738049
    955 1iv6:A
    (-1.00)    		 BS02 >1iv6:C (identical to 1vfc:C)
    ccctaaccctaac
    		 ? N/A P54274 11738049
    956 1ixy:A
    (2.5)    		 BS01 >1ixy:C (identical to 1ixy:D, 1m5r:C, 1m5r:D, 1y6f:C)
    gatactcagatag
    		 2.4.1.27 GO:0006304 ... P04547 12445783
    957 1ixy:A
    (2.5)    		 BS02 >1ixy:E (identical to 1ixy:F, 1m5r:E, 1m5r:F, 1y6f:D)
    ctatctgagtatc
    		 2.4.1.27 GO:0006304 ... P04547 12445783
    958 1ixy:B
    (2.5)    		 BS01 >1ixy:C (identical to 1ixy:D, 1m5r:C, 1m5r:D, 1y6f:C)
    gatactcagatag
    		 2.4.1.27 GO:0006304 ... P04547 12445783
    959 1ixy:B
    (2.5)    		 BS02 >1ixy:D (identical to 1ixy:C, 1m5r:C, 1m5r:D, 1y6f:C)
    gatactcagatag
    		 2.4.1.27 GO:0006304 ... P04547 12445783
    960 1ixy:B
    (2.5)    		 BS03 >1ixy:F (identical to 1ixy:E, 1m5r:E, 1m5r:F, 1y6f:D)
    ctatctgagtatc
    		 2.4.1.27 GO:0006304 ... P04547 12445783
    961 1j1v:A
    (2.1)    		 BS01 >1j1v:B
    tgttatccacagg
    		 ? GO:0003677 ... P03004 12682358
    962 1j1v:A
    (2.1)    		 BS02 >1j1v:C
    cctgtggataaca
    		 ? GO:0003677 ... P03004 12682358
    963 1j3e:A
    (2.5)    		 BS01 >1j3e:B (identical to 1iu3:A, 1iu3:D)
    aaggatccaa
    		 ? GO:0003677 ... P0AFY8 14704346
    964 1j3e:A
    (2.5)    		 BS02 >1j3e:C
    ttggagcctt
    		 ? GO:0003677 ... P0AFY8 14704346
    965 1j46:A
    (-1.00)    		 BS01 >1j46:B (identical to 1j47:B)
    cctgcacaaacacc
    		 ? N/A Q05066 11563911
    966 1j46:A
    (-1.00)    		 BS02 >1j46:C (identical to 1j47:C)
    ggtgtttgtgcagg
    		 ? N/A Q05066 11563911
    967 1j47:A
    (-1.00)    		 BS01 >1j47:B (identical to 1j46:B)
    cctgcacaaacacc
    		 ? N/A Q05066 11563911
    968 1j47:A
    (-1.00)    		 BS02 >1j47:C (identical to 1j46:C)
    ggtgtttgtgcagg
    		 ? N/A Q05066 11563911
    969 1j4w:A
    (-1.00)    		 BS01 >1j4w:B
    tattccctatttttt
    		 ? GO:0003676 ... Q96AE4 11875576
    970 1j59:A
    (2.5)    		 BS01 >1j59:C (identical to 1j59:E)
    gcgaaaagtgtgac
    		 ? GO:0003677 ... P0ACJ8 8757802
    971 1j59:A
    (2.5)    		 BS02 >1j59:F (identical to 1j59:D)
    atatgtcacacttttcg
    		 ? GO:0003677 ... P0ACJ8 8757802
    972 1j59:B
    (2.5)    		 BS01 >1j59:D (identical to 1j59:F)
    atatgtcacacttttcg
    		 ? GO:0003677 ... P0ACJ8 8757802
    973 1j59:B
    (2.5)    		 BS02 >1j59:E (identical to 1j59:C)
    gcgaaaagtgtgac
    		 ? GO:0003677 ... P0ACJ8 8757802
    974 1j5k:A
    (-1.00)    		 BS01 >1j5k:B (identical to 6kco:6F)
    tccct
    		 ? GO:0003676 ... P61978 12093748 PDBbind: Kd=3uM
    975 1j5n:A
    (-1.00)    		 BS01 >1j5n:B
    ggggtgattgttcag
    		 ? GO:0001195 ... P11632 12381320 PDBbind: Kd=7.5nM
    976 1j5n:A
    (-1.00)    		 BS02 >1j5n:C
    ctgaacaatcacccc
    		 ? GO:0001195 ... P11632 12381320 PDBbind: Kd=7.5nM
    977 1j5o:A
    (3.5)    		 BS01 >1j5o:T (identical to 2hmi:E)
    atggcgcccgaacagggac
    		 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003676 ... P03366 10468556
    978 1j5o:A
    (3.5)    		 BS02 >1j5o:P (identical to 2hmi:F)
    gtccctgttcgggcgcca
    		 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003676 ... P03366 10468556
    979 1j75:A
    (1.85)    		 BS01 >1j75:B (identical to 7c0i:F, 3eyi:D, 4ka4:F, 4kmf:B)
    tcgcgcg
    		 ? GO:0003677 ... Q9QY24 11524677 PDBbind: Kd=35nM
    980 1jb7:A
    (1.86)    		 BS01 >1jb7:D (identical to 1jb7:G, 1otc:D, 1pa6:G, 1ph2:G, 1ph3:G, 1ph4:G, 1ph5:G, 1ph6:G, 1ph7:G, 1ph8:G, 1ph9:G, 1phj:G)
    ggggttttgggg
    		 ? GO:0000723 ... P29549 11428895
    981 1jb7:A
    (1.86)    		 BS02 >1jb7:G (identical to 1jb7:D, 1otc:D, 1pa6:G, 1ph2:G, 1ph3:G, 1ph4:G, 1ph5:G, 1ph6:G, 1ph7:G, 1ph8:G, 1ph9:G, 1phj:G)
    ggggttttgggg
    		 ? GO:0000723 ... P29549 11428895
    982 1jb7:B
    (1.86)    		 BS01 >1jb7:D (identical to 1jb7:G, 1otc:D, 1pa6:G, 1ph2:G, 1ph3:G, 1ph4:G, 1ph5:G, 1ph6:G, 1ph7:G, 1ph8:G, 1ph9:G, 1phj:G)
    ggggttttgggg
    		 ? GO:0000781 ... P16458 11428895
    983 1je8:A
    (2.12)    		 BS01 >1je8:C (identical to 1je8:D, 1je8:G, 1je8:H)
    cgtacccattaatgggtacg
    		 ? GO:0003677 ... P0AF28 12352954 PDBbind: Kd=0.15nM
    984 1je8:A
    (2.12)    		 BS02 >1je8:D (identical to 1je8:C, 1je8:G, 1je8:H)
    cgtacccattaatgggtacg
    		 ? GO:0003677 ... P0AF28 12352954 PDBbind: Kd=0.15nM
    985 1je8:B
    (2.12)    		 BS01 >1je8:C (identical to 1je8:D, 1je8:G, 1je8:H)
    cgtacccattaatgggtacg
    		 ? GO:0003677 ... P0AF28 12352954 PDBbind: Kd=0.15nM
    986 1je8:B
    (2.12)    		 BS02 >1je8:D (identical to 1je8:C, 1je8:G, 1je8:H)
    cgtacccattaatgggtacg
    		 ? GO:0003677 ... P0AF28 12352954 PDBbind: Kd=0.15nM
    987 1je8:E
    (2.12)    		 BS01 >1je8:G (identical to 1je8:C, 1je8:D, 1je8:H)
    cgtacccattaatgggtacg
    		 ? GO:0003677 ... P0AF28 12352954 PDBbind: Kd=0.15nM
    988 1je8:E
    (2.12)    		 BS02 >1je8:H (identical to 1je8:C, 1je8:D, 1je8:G)
    cgtacccattaatgggtacg
    		 ? GO:0003677 ... P0AF28 12352954 PDBbind: Kd=0.15nM
    989 1je8:F
    (2.12)    		 BS01 >1je8:G (identical to 1je8:C, 1je8:D, 1je8:H)
    cgtacccattaatgggtacg
    		 ? GO:0003677 ... P0AF28 12352954 PDBbind: Kd=0.15nM
    990 1je8:F
    (2.12)    		 BS02 >1je8:H (identical to 1je8:C, 1je8:D, 1je8:G)
    cgtacccattaatgggtacg
    		 ? GO:0003677 ... P0AF28 12352954 PDBbind: Kd=0.15nM
    991 1jey:A
    (2.5)    		 BS01 >1jey:C
    gtttttagtttattgggc
    		 3.6.4.-
    4.2.99.-    		 GO:0000723 ... P12956 11493912 PDBbind: Kd=0.15nM
    992 1jey:A
    (2.5)    		 BS02 >1jey:D
    gcccagctttcccagctaataaactaaaaac
    		 3.6.4.-
    4.2.99.-    		 GO:0000723 ... P12956 11493912 PDBbind: Kd=0.15nM
    993 1jey:B
    (2.5)    		 BS01 >1jey:C
    gtttttagtttattgggc
    		 3.6.4.- GO:0000723 ... P13010 11493912 PDBbind: Kd=0.15nM
    994 1jey:B
    (2.5)    		 BS02 >1jey:D
    gcccagctttcccagctaataaactaaaaac
    		 3.6.4.- GO:0000723 ... P13010 11493912 PDBbind: Kd=0.15nM
    995 1jfi:B
    (2.62)    		 BS01 >1jfi:D
    ttggctataaaagggctc
    		 ? GO:0000122 ... Q01658 11461703
    996 1jfi:B
    (2.62)    		 BS02 >1jfi:E
    gagcccttttatagccaa
    		 ? GO:0000122 ... Q01658 11461703
    997 1jfi:C
    (2.62)    		 BS01 >1jfi:D
    ttggctataaaagggctc
    		 ? GO:0003677 ... P20226 11461703
    998 1jfi:C
    (2.62)    		 BS02 >1jfi:E
    gagcccttttatagccaa
    		 ? GO:0003677 ... P20226 11461703
    999 1jfs:A
    (2.9)    		 BS01 >1jfs:B (identical to 1bdh:B, 1bdi:B, 1jft:B, 2pua:B, 2pub:B, 2puc:B, 2pud:B, 2pue:B, 2puf:B, 2pug:B, 1qpz:M, 1vpw:B)
    tacgcaaacgtttgcgt
    		 ? GO:0000976 ... P0ACP7 11781089 PDBbind: Kd=2.2nM
    1000 1jft:A
    (2.5)    		 BS01 >1jft:B (identical to 1bdh:B, 1bdi:B, 1jfs:B, 2pua:B, 2pub:B, 2puc:B, 2pud:B, 2pue:B, 2puf:B, 2pug:B, 1qpz:M, 1vpw:B)
    tacgcaaacgtttgcgt
    		 ? GO:0000976 ... P0ACP7 11781089 PDBbind: Kd=0.7nM
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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