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BioLiP
Download all results in tab-seperated text for 38 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 2wkh:A (1.791) BS01 ZZ7 3.5.2.6 GO:0008658 ... P14489 21108605
    2 2wkh:B (1.791) BS01 ZZ7 3.5.2.6 GO:0008658 ... P14489 21108605
    3 3hun:A (2.0) BS01 ZZ7 3.4.16.4 GO:0004180 ... A0A0H2WY27 19854906
    4 3hun:B (2.0) BS01 ZZ7 3.4.16.4 GO:0004180 ... A0A0H2WY27 19854906
    5 4h0d:A (1.498) BS01 ZZ7 3.5.2.6 GO:0008270 ... C7C422 N/A
    6 4h0d:B (1.498) BS02 ZZ7 3.5.2.6 GO:0008270 ... C7C422 N/A
    7 4hl1:A (1.5) BS01 ZZ7 3.5.2.6 GO:0008270 ... C7C422 N/A
    8 4hl1:B (1.5) BS01 ZZ7 3.5.2.6 GO:0008270 ... C7C422 N/A
    9 4hl2:A (1.05) BS01 ZZ7 3.5.2.6 GO:0008270 ... C7C422 N/A
    10 4hl2:B (1.05) BS01 ZZ7 3.5.2.6 GO:0008270 ... C7C422 N/A
    11 4raw:A (1.302) BS01 ZZ7 3.5.2.6 GO:0008270 ... C7C422 N/A
    12 4raw:B (1.302) BS01 ZZ7 3.5.2.6 GO:0008270 ... C7C422 N/A
    13 5o2f:A (2.01) BS03 ZZ7 3.5.2.6 GO:0008270 ... C7C422 30466711
    14 5o2f:A (2.01) BS04 ZZ7 3.5.2.6 GO:0008270 ... C7C422 30466711
    15 5o2f:B (2.01) BS01 ZZ7 3.5.2.6 GO:0008270 ... C7C422 30466711
    16 5o2f:B (2.01) BS04 ZZ7 3.5.2.6 GO:0008270 ... C7C422 30466711
    17 5zge:A (1.0) BS01 ZZ7 3.5.2.6 GO:0008270 ... C7C422 30150473
    18 5zge:B (1.0) BS02 ZZ7 3.5.2.6 GO:0008270 ... C7C422 30150473
    19 5zgp:A (1.15) BS03 ZZ7 3.5.2.6 GO:0008270 ... C7C422 30150473
    20 5zgp:B (1.15) BS03 ZZ7 3.5.2.6 GO:0008270 ... C7C422 30150473
    21 5zgq:A (1.5) BS03 ZZ7 3.5.2.6 GO:0008270 ... C7C422 30150473
    22 5zgq:B (1.5) BS03 ZZ7 3.5.2.6 GO:0008270 ... C7C422 30150473
    23 5zgr:A (1.15) BS03 ZZ7 3.5.2.6 GO:0008270 ... C7C422 30150473
    24 5zgr:B (1.15) BS03 ZZ7 3.5.2.6 GO:0008270 ... C7C422 30150473
    25 6jkb:A (2.444) BS03 ZZ7 3.5.2.6 N/A C7C422 34853284
    26 6jkb:B (2.444) BS03 ZZ7 3.5.2.6 N/A C7C422 34853284
    27 6ol8:A (2.1) BS03 ZZ7 3.5.2.6 GO:0016787 ... A0A024FRL9 32353499
    28 6ol8:B (2.1) BS03 ZZ7 3.5.2.6 GO:0016787 ... A0A024FRL9 32353499
    29 6xd7:A (1.65) BS01 ZZ7 3.5.2.6 GO:0008800 ... Q9F663 33273017
    30 7rcw:A (3.0) BS01 ZZ7 2.4.1.129 GO:0008658 ... Q18B08 35902581
    31 7rcz:A (2.2) BS03 ZZ7 ? GO:0008658 ... Q182Z0 35902581
    32 7rcz:B (2.2) BS02 ZZ7 ? GO:0008658 ... Q182Z0 35902581
    33 8gjk:C (3.16) BS01 ZZ7 ? GO:0005886 ... A0A1C9A1J1 37289051
    34 8gpc:A (1.4) BS03 ZZ7 3.5.2.6 GO:0008800 ... E9NWK5 38336327
    35 8gpc:A (1.4) BS04 ZZ7 3.5.2.6 GO:0008800 ... E9NWK5 38336327
    36 8gpc:B (1.4) BS01 ZZ7 3.5.2.6 GO:0008800 ... E9NWK5 38336327
    37 8gpc:B (1.4) BS04 ZZ7 3.5.2.6 GO:0008800 ... E9NWK5 38336327
    38 8isq:A (2.24) BS01 ZZ7 3.5.2.6 GO:0008800 ... A0A126NGE0 38588869
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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