Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 36 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 1 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8tbf:A (1.5) BS03 ZNI 3.6.5.2 GO:0003924 ... P01116 38589574
    2 8tbf:B (1.5) BS03 ZNI 3.6.5.2 GO:0003924 ... P01116 38589574
    3 8tbf:C (1.5) BS01 ZNI 5.2.1.8 GO:0000413 ... P62937 38589574
    4 8tbf:D (1.5) BS01 ZNI 5.2.1.8 GO:0000413 ... P62937 38589574
    5 8tbg:A (1.2) BS03 ZNI 3.6.5.2 GO:0003924 ... P01112 38589574
    6 8tbg:B (1.2) BS03 ZNI 3.6.5.2 GO:0003924 ... P01112 38589574
    7 8tbg:C (1.2) BS01 ZNI 5.2.1.8 GO:0000413 ... P62937 38589574
    8 8tbg:D (1.2) BS01 ZNI 5.2.1.8 GO:0000413 ... P62937 38589574
    9 8tbh:A (1.5) BS03 ZNI 3.6.5.2 GO:0003924 ... P01116 38589574
    10 8tbh:B (1.5) BS03 ZNI 3.6.5.2 GO:0003924 ... P01116 38589574
    11 8tbh:C (1.5) BS01 ZNI 5.2.1.8 GO:0000413 ... P62937 38589574
    12 8tbh:D (1.5) BS01 ZNI 5.2.1.8 GO:0000413 ... P62937 38589574
    13 8tbi:A (1.59) BS03 ZNI 3.6.5.2 GO:0000139 ... P01111 38589574
    14 8tbi:B (1.59) BS03 ZNI 3.6.5.2 GO:0000139 ... P01111 38589574
    15 8tbi:C (1.59) BS01 ZNI 5.2.1.8 GO:0000413 ... P62937 38589574
    16 8tbi:D (1.59) BS01 ZNI 5.2.1.8 GO:0000413 ... P62937 38589574
    17 8tbj:A (1.45) BS03 ZNI 3.6.5.2 GO:0003924 ... P01116 38589574
    18 8tbj:B (1.45) BS03 ZNI 3.6.5.2 GO:0003924 ... P01116 38589574
    19 8tbj:C (1.45) BS01 ZNI 5.2.1.8 GO:0000413 ... P62937 38589574
    20 8tbj:D (1.45) BS01 ZNI 5.2.1.8 GO:0000413 ... P62937 38589574
    21 8tbk:A (1.26) BS03 ZNI 3.6.5.2 GO:0003924 ... P01116 38589574
    22 8tbk:B (1.26) BS03 ZNI 3.6.5.2 GO:0003924 ... P01116 38589574
    23 8tbk:C (1.26) BS01 ZNI 5.2.1.8 GO:0000413 ... P62937 38589574
    24 8tbk:D (1.26) BS01 ZNI 5.2.1.8 GO:0000413 ... P62937 38589574
    25 8tbl:A (1.88) BS03 ZNI 3.6.5.2 GO:0003924 ... P01116 38589574
    26 8tbl:B (1.88) BS03 ZNI 3.6.5.2 GO:0003924 ... P01116 38589574
    27 8tbl:C (1.88) BS01 ZNI 5.2.1.8 GO:0000413 ... P62937 38589574
    28 8tbl:D (1.88) BS01 ZNI 5.2.1.8 GO:0000413 ... P62937 38589574
    29 8tbm:A (1.57) BS03 ZNI 3.6.5.2 GO:0003924 ... P01116 38589574
    30 8tbm:B (1.57) BS03 ZNI 3.6.5.2 GO:0003924 ... P01116 38589574
    31 8tbm:C (1.57) BS01 ZNI 5.2.1.8 GO:0000413 ... P62937 38589574
    32 8tbm:D (1.57) BS01 ZNI 5.2.1.8 GO:0000413 ... P62937 38589574
    33 8tbn:A (1.46) BS03 ZNI 3.6.5.2 GO:0003924 ... P01116 38589574
    34 8tbn:B (1.46) BS03 ZNI 3.6.5.2 GO:0003924 ... P01116 38589574
    35 8tbn:C (1.46) BS01 ZNI 5.2.1.8 GO:0000413 ... P62937 38589574
    36 8tbn:D (1.46) BS01 ZNI 5.2.1.8 GO:0000413 ... P62937 38589574
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218