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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 157 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 3kg2:A (3.6) BS01 ZK1 ? GO:0000149 ... P19491 19946266
    2 3kg2:B (3.6) BS01 ZK1 ? GO:0000149 ... P19491 19946266
    3 3kg2:C (3.6) BS01 ZK1 ? GO:0000149 ... P19491 19946266
    4 3kg2:D (3.6) BS01 ZK1 ? GO:0000149 ... P19491 19946266
    5 3kgc:B (1.55) BS02 ZK1 ? GO:0015276 ... P19491 19946266
    6 4u4g:A (4.49) BS01 ZK1 ? GO:0000149 ... P19491 25103407
    7 4u4g:B (4.49) BS01 ZK1 ? GO:0000149 ... P19491 25103407
    8 4u4g:C (4.49) BS01 ZK1 ? GO:0000149 ... P19491 25103407
    9 4u4g:D (4.49) BS01 ZK1 ? GO:0000149 ... P19491 25103407
    10 4uqj:A (10.4) BS01 ZK1 ? GO:0000149 ... P19491 25119039
    11 4uqj:B (10.4) BS01 ZK1 ? GO:0000149 ... P19491 25119039
    12 4uqj:C (10.4) BS01 ZK1 ? GO:0000149 ... P19491 25119039
    13 4uqj:D (10.4) BS01 ZK1 ? GO:0000149 ... P19491 25119039
    14 5kbs:A (8.7) BS01 ZK1 ? GO:0000149 ... O88602
    P19491    		 27365450
    15 5kbs:B (8.7) BS01 ZK1 ? GO:0000149 ... O88602
    P19491    		 27365450
    16 5kbs:C (8.7) BS01 ZK1 ? GO:0000149 ... O88602
    P19491    		 27365450
    17 5kbs:D (8.7) BS01 ZK1 ? GO:0000149 ... O88602
    P19491    		 27365450
    18 5kbt:A (6.4) BS01 ZK1 ? GO:0000149 ... O88602
    P19491    		 27365450
    19 5kbt:B (6.4) BS01 ZK1 ? GO:0000149 ... O88602
    P19491    		 27365450
    20 5kbt:C (6.4) BS01 ZK1 ? GO:0000149 ... O88602
    P19491    		 27365450
    21 5kbt:D (6.4) BS01 ZK1 ? GO:0000149 ... O88602
    P19491    		 27365450
    22 5kbu:A (7.8) BS01 ZK1 ? GO:0000149 ... O88602
    P19491    		 27365450
    23 5kbu:B (7.8) BS01 ZK1 ? GO:0000149 ... O88602
    P19491    		 27365450
    24 5kbu:C (7.8) BS01 ZK1 ? GO:0000149 ... O88602
    P19491    		 27365450
    25 5kbu:D (7.8) BS01 ZK1 ? GO:0000149 ... O88602
    P19491    		 27365450
    26 5kbv:A (6.8) BS01 ZK1 ? GO:0000149 ... P19491 27365450
    27 5kbv:B (6.8) BS01 ZK1 ? GO:0000149 ... P19491 27365450
    28 5kbv:C (6.8) BS01 ZK1 ? GO:0000149 ... P19491 27365450
    29 5kbv:D (6.8) BS01 ZK1 ? GO:0000149 ... P19491 27365450
    30 5vhw:A (7.8) BS01 ZK1 ? GO:0000149 ... D3ZK93
    P19491    		 28472657
    31 5vhw:B (7.8) BS01 ZK1 ? GO:0000149 ... D3ZK93
    P19491    		 28472657
    32 5vhw:C (7.8) BS01 ZK1 ? GO:0000149 ... D3ZK93
    P19491    		 28472657
    33 5vhw:D (7.8) BS01 ZK1 ? GO:0000149 ... D3ZK93
    P19491    		 28472657
    34 5vhx:A (8.3) BS01 ZK1 ? GO:0000149 ... D3ZK93
    P19491    		 28472657
    35 5vhx:B (8.3) BS01 ZK1 ? GO:0000149 ... D3ZK93
    P19491    		 28472657
    36 5vhx:C (8.3) BS01 ZK1 ? GO:0000149 ... D3ZK93
    P19491    		 28472657
    37 5vhx:D (8.3) BS01 ZK1 ? GO:0000149 ... D3ZK93
    P19491    		 28472657
    38 5vhy:A (4.6) BS01 ZK1 ? GO:0000149 ... D3ZK93
    P19491    		 28472657
    39 5vhy:B (4.6) BS01 ZK1 ? GO:0000149 ... D3ZK93
    P19491    		 28472657
    40 5vhy:C (4.6) BS01 ZK1 ? GO:0000149 ... D3ZK93
    P19491    		 28472657
    41 5vhy:D (4.6) BS01 ZK1 ? GO:0000149 ... D3ZK93
    P19491    		 28472657
    42 5wek:A (4.6) BS01 ZK1 ? GO:0000149 ... D3Z7H4
    P19491    		 28737760
    43 5wek:B (4.6) BS01 ZK1 ? GO:0000149 ... D3Z7H4
    P19491    		 28737760
    44 5wek:C (4.6) BS01 ZK1 ? GO:0000149 ... D3Z7H4
    P19491    		 28737760
    45 5wek:D (4.6) BS01 ZK1 ? GO:0000149 ... D3Z7H4
    P19491    		 28737760
    46 5wel:A (4.4) BS01 ZK1 ? GO:0000149 ... D3Z7H4
    P19491    		 28737760
    47 5wel:B (4.4) BS01 ZK1 ? GO:0000149 ... D3Z7H4
    P19491    		 28737760
    48 5wel:C (4.4) BS01 ZK1 ? GO:0000149 ... D3Z7H4
    P19491    		 28737760
    49 5wel:D (4.4) BS01 ZK1 ? GO:0000149 ... D3Z7H4
    P19491    		 28737760
    50 5zg2:A (1.25) BS01 ZK1 ? GO:0015276 ... P42262 30209408
    51 5zg2:B (1.25) BS02 ZK1 ? GO:0015276 ... P42262 30209408
    52 6fqj:A (2.50002) BS01 ZK1 ? GO:0015276 ... P19491 31541113
    53 6fqj:B (2.50002) BS01 ZK1 ? GO:0015276 ... P19491 31541113
    54 6fqj:C (2.50002) BS01 ZK1 ? GO:0015276 ... P19491 31541113
    55 6fqj:D (2.50002) BS01 ZK1 ? GO:0015276 ... P19491 31541113
    56 6fqj:E (2.50002) BS01 ZK1 ? GO:0015276 ... P19491 31541113
    57 6fqj:F (2.50002) BS01 ZK1 ? GO:0015276 ... P19491 31541113
    58 6fqj:G (2.50002) BS01 ZK1 ? GO:0015276 ... P19491 31541113
    59 6fqj:H (2.50002) BS01 ZK1 ? GO:0015276 ... P19491 31541113
    60 6fqk:A (1.9801) BS01 ZK1 ? GO:0015276 ... P19491 31541113
    61 6fqk:B (1.9801) BS01 ZK1 ? GO:0015276 ... P19491 31541113
    62 6njl:A (6.7) BS01 ZK1 ? GO:0005216 ... P19490 30975770
    63 6njl:B (6.7) BS01 ZK1 ? GO:0005216 ... P19491 30975770
    64 6njl:C (6.7) BS01 ZK1 ? GO:0005216 ... P19490 30975770
    65 6njl:D (6.7) BS01 ZK1 ? GO:0005216 ... P19491 30975770
    66 6njm:A (6.5) BS01 ZK1 ? GO:0005216 ... P19492 30975770
    67 6njm:B (6.5) BS01 ZK1 ? GO:0005216 ... P19491 30975770
    68 6njm:C (6.5) BS01 ZK1 ? GO:0005216 ... P19492 30975770
    69 6njm:D (6.5) BS01 ZK1 ? GO:0005216 ... P19491 30975770
    70 6njn:A (6.5) BS01 ZK1 ? GO:0005216 ... P19490 30975770
    71 6njn:B (6.5) BS01 ZK1 ? GO:0005216 ... P19491 30975770
    72 6njn:C (6.5) BS01 ZK1 ? GO:0005216 ... P19492 30975770
    73 6njn:D (6.5) BS01 ZK1 ? GO:0005216 ... P19491 30975770
    74 6peq:A (2.97) BS01 ZK1 ? GO:0005216 ... P19491 31806817
    75 6peq:B (2.97) BS01 ZK1 ? GO:0005216 ... P19491 31806817
    76 6peq:C (2.97) BS01 ZK1 ? GO:0005216 ... P19491 31806817
    77 6peq:D (2.97) BS01 ZK1 ? GO:0005216 ... P19491 31806817
    78 6ruq:A (4.65) BS02 ZK1 ? GO:0000149 ... P19491 32543078
    79 6ruq:B (4.65) BS02 ZK1 ? GO:0000149 ... P19491 32543078
    80 6ruq:C (4.65) BS02 ZK1 ? GO:0000149 ... P19491 32543078
    81 6ruq:D (4.65) BS02 ZK1 ? GO:0000149 ... P19491 32543078
    82 6ucb:A (3.28) BS01 ZK1 ? GO:0005216 ... P19491 31806817
    83 6ucb:B (3.28) BS01 ZK1 ? GO:0005216 ... P19491 31806817
    84 6ucb:C (3.28) BS01 ZK1 ? GO:0005216 ... P19491 31806817
    85 6ucb:D (3.28) BS01 ZK1 ? GO:0005216 ... P19491 31806817
    86 6ud4:A (3.3) BS01 ZK1 ? GO:0005216 ... P19491 31806817
    87 6ud4:B (3.3) BS01 ZK1 ? GO:0005216 ... P19491 31806817
    88 6ud4:C (3.3) BS02 ZK1 ? GO:0005216 ... P19491 31806817
    89 6ud4:D (3.3) BS02 ZK1 ? GO:0005216 ... P19491 31806817
    90 6ud8:A (3.2) BS01 ZK1 ? GO:0005216 ... P19491 31806817
    91 6ud8:B (3.2) BS01 ZK1 ? GO:0005216 ... P19491 31806817
    92 6ud8:C (3.2) BS01 ZK1 ? GO:0005216 ... P19491 31806817
    93 6ud8:D (3.2) BS01 ZK1 ? GO:0005216 ... P19491 31806817
    94 7ldd:A (3.4) BS01 ZK1 ? GO:0005216 ... P23818 33981040
    95 7ldd:B (3.4) BS01 ZK1 ? GO:0005216 ... P23819 33981040
    96 7ldd:C (3.4) BS01 ZK1 ? GO:0005216 ... P23818 33981040
    97 7ldd:D (3.4) BS01 ZK1 ? GO:0005216 ... P23819 33981040
    98 7lde:A (3.9) BS01 ZK1 ? GO:0005216 ... P23818 33981040
    99 7lde:B (3.9) BS01 ZK1 ? GO:0005216 ... P23819 33981040
    100 7lde:C (3.9) BS01 ZK1 ? GO:0005216 ... P23818 33981040
    101 7lde:D (3.9) BS01 ZK1 ? GO:0005216 ... P23819 33981040
    102 7lep:A (3.25) BS01 ZK1 N/A GO:0005216 ... N/A 33981040
    103 7lep:B (3.25) BS01 ZK1 ? GO:0005216 ... P23819 33981040
    104 7lep:C (3.25) BS01 ZK1 N/A GO:0005216 ... N/A 33981040
    105 7lep:D (3.25) BS01 ZK1 ? GO:0005216 ... P23819 33981040
    106 7rz4:A (3.6) BS01 ZK1 ? GO:0000149 ... P19491 34678168
    107 7rz4:B (3.6) BS01 ZK1 ? GO:0000149 ... P19491 34678168
    108 7rz4:C (3.6) BS01 ZK1 ? GO:0000149 ... P19491 34678168
    109 7rz4:D (3.6) BS01 ZK1 ? GO:0000149 ... P19491 34678168
    110 7rz5:A (3.3) BS01 ZK1 ? GO:0000149 ... P19491 34678168
    111 7rz5:B (3.3) BS01 ZK1 ? GO:0000149 ... P19491 34678168
    112 7rz5:C (3.3) BS01 ZK1 ? GO:0000149 ... P19491 34678168
    113 7rz5:D (3.3) BS01 ZK1 ? GO:0000149 ... P19491 34678168
    114 8ayl:A (3.2) BS02 ZK1 ? GO:0001540 ... P19490 36966141
    115 8ayl:B (3.2) BS01 ZK1 ? GO:0005216 ... P19491 36966141
    116 8ayl:C (3.2) BS02 ZK1 ? GO:0001540 ... P19490 36966141
    117 8ayl:D (3.2) BS01 ZK1 ? GO:0005216 ... P19491 36966141
    118 8aym:A (3.3) BS01 ZK1 ? GO:0001540 ... P19490 36966141
    119 8aym:B (3.3) BS01 ZK1 ? GO:0005216 ... P19491 36966141
    120 8aym:C (3.3) BS02 ZK1 ? GO:0001540 ... P19490 36966141
    121 8aym:D (3.3) BS01 ZK1 ? GO:0005216 ... P19491 36966141
    122 8ayn:A (2.8) BS02 ZK1 ? GO:0001540 ... P19490 36966141
    123 8ayn:B (2.8) BS01 ZK1 ? GO:0005216 ... P19491 36966141
    124 8ayn:C (2.8) BS02 ZK1 ? GO:0001540 ... P19490 36966141
    125 8ayn:D (2.8) BS01 ZK1 ? GO:0005216 ... P19491 36966141
    126 8c1q:A (2.82) BS01 ZK1 ? GO:0001540 ... P19490 37704721
    127 8c1q:B (2.82) BS01 ZK1 ? GO:0001540 ... P19490 37704721
    128 8c1q:C (2.82) BS01 ZK1 ? GO:0001540 ... P19490 37704721
    129 8c1q:D (2.82) BS01 ZK1 ? GO:0001540 ... P19490 37704721
    130 8c1r:A (3.2) BS01 ZK1 ? GO:0000149 ... P19491 37704721
    131 8c1r:B (3.2) BS01 ZK1 ? GO:0000149 ... P19491 37704721
    132 8c1r:C (3.2) BS01 ZK1 ? GO:0000149 ... P19491 37704721
    133 8c1r:D (3.2) BS01 ZK1 ? GO:0000149 ... P19491 37704721
    134 8ss2:A (3.58) BS01 ZK1 ? GO:0000149 ... P19491
    Q8VHW8    		 37653241
    135 8ss2:B (3.58) BS01 ZK1 ? GO:0000149 ... P19491
    Q8VHW8    		 37653241
    136 8ss2:C (3.58) BS01 ZK1 ? GO:0000149 ... P19491
    Q8VHW8    		 37653241
    137 8ss2:D (3.58) BS01 ZK1 ? GO:0000149 ... P19491
    Q8VHW8    		 37653241
    138 8ss3:A (3.21) BS01 ZK1 ? GO:0000149 ... P19491
    Q8VHW8    		 37653241
    139 8ss3:B (3.21) BS01 ZK1 ? GO:0000149 ... P19491
    Q8VHW8    		 37653241
    140 8ss3:C (3.21) BS01 ZK1 ? GO:0000149 ... P19491
    Q8VHW8    		 37653241
    141 8ss3:D (3.21) BS02 ZK1 ? GO:0000149 ... P19491
    Q8VHW8    		 37653241
    142 8ss6:A (3.01) BS02 ZK1 ? GO:0000149 ... P19491
    Q8VHW8    		 37653241
    143 8ss6:B (3.01) BS03 ZK1 ? GO:0000149 ... P19491
    Q8VHW8    		 37653241
    144 8ss6:C (3.01) BS02 ZK1 ? GO:0000149 ... P19491
    Q8VHW8    		 37653241
    145 8ss6:D (3.01) BS03 ZK1 ? GO:0000149 ... P19491
    Q8VHW8    		 37653241
    146 8ss7:A (2.76) BS02 ZK1 ? GO:0000149 ... P19491
    Q8VHW8    		 37653241
    147 8ss7:B (2.76) BS02 ZK1 ? GO:0000149 ... P19491
    Q8VHW8    		 37653241
    148 8ss7:C (2.76) BS02 ZK1 ? GO:0000149 ... P19491
    Q8VHW8    		 37653241
    149 8ss7:D (2.76) BS03 ZK1 ? GO:0000149 ... P19491
    Q8VHW8    		 37653241
    150 8ss8:A (2.81) BS02 ZK1 ? GO:0000149 ... P19491
    Q8VHW8    		 37653241
    151 8ss8:B (2.81) BS02 ZK1 ? GO:0000149 ... P19491
    Q8VHW8    		 37653241
    152 8ss8:C (2.81) BS02 ZK1 ? GO:0000149 ... P19491
    Q8VHW8    		 37653241
    153 8ss8:D (2.81) BS02 ZK1 ? GO:0000149 ... P19491
    Q8VHW8    		 37653241
    154 8ss9:A (2.72) BS02 ZK1 ? GO:0000149 ... P19491
    Q8VHW8    		 37653241
    155 8ss9:B (2.72) BS03 ZK1 ? GO:0000149 ... P19491
    Q8VHW8    		 37653241
    156 8ss9:C (2.72) BS02 ZK1 ? GO:0000149 ... P19491
    Q8VHW8    		 37653241
    157 8ss9:D (2.72) BS03 ZK1 ? GO:0000149 ... P19491
    Q8VHW8    		 37653241
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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