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BioLiP
Download all results in tab-seperated text for 60 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6pyz:A (2.02) BS03 ZIQ 1.13.11.11 GO:0004833 ... P48775 31682426
    2 6pyz:B (2.02) BS04 ZIQ 1.13.11.11 GO:0004833 ... P48775 31682426
    3 6pyz:C (2.02) BS03 ZIQ 1.13.11.11 GO:0004833 ... P48775 31682426
    4 6pyz:D (2.02) BS04 ZIQ 1.13.11.11 GO:0004833 ... P48775 31682426
    5 7lu7:AAA (2.3) BS02 ZIQ 1.13.11.11 GO:0004833 ... P48775 39106326
    6 7lu7:BBB (2.3) BS04 ZIQ 1.13.11.11 GO:0004833 ... P48775 39106326
    7 7lu7:CCC (2.3) BS02 ZIQ 1.13.11.11 GO:0004833 ... P48775 39106326
    8 7lu7:DDD (2.3) BS03 ZIQ 1.13.11.11 GO:0004833 ... P48775 39106326
    9 7ui3:A (3.18) BS01 ZIQ 1.13.11.11 GO:0004833 ... P48775 N/A
    10 7ui3:B (3.18) BS01 ZIQ 1.13.11.11 GO:0004833 ... P48775 N/A
    11 7ui3:C (3.18) BS01 ZIQ 1.13.11.11 GO:0004833 ... P48775 N/A
    12 7ui3:D (3.18) BS01 ZIQ 1.13.11.11 GO:0004833 ... P48775 N/A
    13 8qv7:A (2.66) BS01 ZIQ 1.13.11.11 GO:0004833 ... P48775 N/A
    14 8qv7:B (2.66) BS01 ZIQ 1.13.11.11 GO:0004833 ... P48775 N/A
    15 8qv7:C (2.66) BS01 ZIQ 1.13.11.11 GO:0004833 ... P48775 N/A
    16 8qv7:D (2.66) BS01 ZIQ 1.13.11.11 GO:0004833 ... P48775 N/A
    17 8r5q:A (2.62) BS02 ZIQ 1.13.11.11 GO:0004833 ... P48775 N/A
    18 8r5q:B (2.62) BS03 ZIQ 1.13.11.11 GO:0004833 ... P48775 N/A
    19 8r5q:C (2.62) BS02 ZIQ 1.13.11.11 GO:0004833 ... P48775 N/A
    20 8r5q:D (2.62) BS03 ZIQ 1.13.11.11 GO:0004833 ... P48775 N/A
    21 8r5r:A (3.078) BS02 ZIQ 1.13.11.11 GO:0004833 ... P48775 N/A
    22 8r5r:B (3.078) BS03 ZIQ 1.13.11.11 GO:0004833 ... P48775 N/A
    23 8r5r:C (3.078) BS02 ZIQ 1.13.11.11 GO:0004833 ... P48775 N/A
    24 8r5r:D (3.078) BS03 ZIQ 1.13.11.11 GO:0004833 ... P48775 N/A
    25 8vtq:A (2.05) BS02 ZIQ N/A N/A P48775 39106326
    26 8vtq:B (2.05) BS03 ZIQ N/A N/A P48775 39106326
    27 8vtq:C (2.05) BS02 ZIQ N/A N/A P48775 39106326
    28 8vtq:D (2.05) BS03 ZIQ N/A N/A P48775 39106326
    29 8vug:A (2.05) BS02 ZIQ N/A N/A P48775 39106326
    30 8vug:B (2.05) BS03 ZIQ N/A N/A P48775 39106326
    31 8vug:C (2.05) BS02 ZIQ N/A N/A P48775 39106326
    32 8vug:D (2.05) BS02 ZIQ N/A N/A P48775 39106326
    33 8vzv:AAA (2.29) BS02 ZIQ N/A N/A P48775 39106326
    34 8vzv:BBB (2.29) BS03 ZIQ N/A N/A P48775 39106326
    35 8vzv:CCC (2.29) BS02 ZIQ N/A N/A P48775 39106326
    36 8vzv:DDD (2.29) BS02 ZIQ N/A N/A P48775 39106326
    37 8w1h:A (2.1) BS02 ZIQ N/A N/A P48775 39106326
    38 8w1h:B (2.1) BS03 ZIQ N/A N/A P48775 39106326
    39 8w1h:C (2.1) BS02 ZIQ N/A N/A P48775 39106326
    40 8w1h:D (2.1) BS03 ZIQ N/A N/A P48775 39106326
    41 8w2k:A (2.45) BS02 ZIQ N/A N/A P48775 39106326
    42 8w2k:B (2.45) BS03 ZIQ N/A N/A P48775 39106326
    43 8w2k:C (2.45) BS02 ZIQ N/A N/A P48775 39106326
    44 8w2k:D (2.45) BS03 ZIQ N/A N/A P48775 39106326
    45 9at2:A (2.25) BS02 ZIQ N/A N/A P48775 39106326
    46 9at2:B (2.25) BS03 ZIQ N/A N/A P48775 39106326
    47 9at2:C (2.25) BS02 ZIQ N/A N/A P48775 39106326
    48 9at2:D (2.25) BS03 ZIQ N/A N/A P48775 39106326
    49 9b17:A (2.65) BS03 ZIQ N/A N/A P48775 39106326
    50 9b17:B (2.65) BS03 ZIQ N/A N/A P48775 39106326
    51 9b17:C (2.65) BS03 ZIQ N/A N/A P48775 39106326
    52 9b17:D (2.65) BS04 ZIQ N/A N/A P48775 39106326
    53 9b1q:A (2.624) BS03 ZIQ N/A N/A P48775 39106326
    54 9b1q:B (2.624) BS04 ZIQ N/A N/A P48775 39106326
    55 9b1q:C (2.624) BS03 ZIQ N/A N/A P48775 39106326
    56 9b1q:D (2.624) BS04 ZIQ N/A N/A P48775 39106326
    57 9ezj:A (2.612) BS01 ZIQ 1.13.11.11 GO:0004833 ... P48775 N/A
    58 9ezj:B (2.612) BS01 ZIQ 1.13.11.11 GO:0004833 ... P48775 N/A
    59 9ezj:C (2.612) BS01 ZIQ 1.13.11.11 GO:0004833 ... P48775 N/A
    60 9ezj:D (2.612) BS01 ZIQ 1.13.11.11 GO:0004833 ... P48775 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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