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BioLiP
Download all results in tab-seperated text for 113 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 5d2a:A (2.134) BS04 ZDC ? GO:0030246 ... Q9HYN5 29896342 PDBbind: -logKd/Ki=5.59, Kd=2570nM
    2 5d2a:B (2.134) BS03 ZDC ? GO:0030246 ... Q9HYN5 29896342 PDBbind: -logKd/Ki=5.59, Kd=2570nM
    3 5i8m:A (2.13) BS04 ZDC ? GO:0030246 ... Q9HYN5 29147502
    4 5i8m:B (2.13) BS01 ZDC ? GO:0030246 ... Q9HYN5 29147502
    5 5i8m:C (2.13) BS03 ZDC ? GO:0030246 ... Q9HYN5 29147502
    6 5i8m:D (2.13) BS02 ZDC ? GO:0030246 ... Q9HYN5 29147502
    7 5i8x:A (1.89) BS01 ZDC ? GO:0030246 ... Q9HYN5 29147502
    8 5i8x:B (1.89) BS03 ZDC ? GO:0030246 ... Q9HYN5 29147502
    9 5i8x:C (1.89) BS02 ZDC ? GO:0030246 ... Q9HYN5 29147502
    10 5i8x:D (1.89) BS02 ZDC ? GO:0030246 ... Q9HYN5 29147502
    11 5nes:A (1.606) BS04 ZDC ? GO:0030246 ... Q9HYN5 29163899
    12 5nes:B (1.606) BS01 ZDC ? GO:0030246 ... Q9HYN5 29163899
    13 5nes:C (1.606) BS02 ZDC ? GO:0030246 ... Q9HYN5 29163899
    14 5nes:D (1.606) BS02 ZDC ? GO:0030246 ... Q9HYN5 29163899
    15 5ney:A (1.55) BS01 ZDC ? GO:0030246 ... Q9HYN5 29163899
    16 5ney:B (1.55) BS04 ZDC ? GO:0030246 ... Q9HYN5 29163899
    17 5ney:C (1.55) BS01 ZDC ? GO:0030246 ... Q9HYN5 29163899
    18 5ney:D (1.55) BS01 ZDC ? GO:0030246 ... Q9HYN5 29163899
    19 5nf0:A (1.271) BS03 ZDC ? GO:0030246 ... Q9HYN5 29163899
    20 5nf0:B (1.271) BS04 ZDC ? GO:0030246 ... Q9HYN5 29163899
    21 5nf0:C (1.271) BS04 ZDC ? GO:0030246 ... Q9HYN5 29163899
    22 5nf0:D (1.271) BS04 ZDC ? GO:0030246 ... Q9HYN5 29163899
    23 5ngq:A (1.17) BS03 ZDC ? GO:0030246 ... Q9HYN5 29147502
    24 5ngq:B (1.17) BS03 ZDC ? GO:0030246 ... Q9HYN5 29147502
    25 5ngq:C (1.17) BS03 ZDC ? GO:0030246 ... Q9HYN5 29147502
    26 5ngq:D (1.17) BS04 ZDC ? GO:0030246 ... Q9HYN5 29147502
    27 6q6w:A (1.438) BS03 ZDC ? GO:0030246 ... Q9HYN5 30830745
    28 6q6x:A (1.525) BS03 ZDC ? GO:0030246 ... Q9HYN5 30830745
    29 6q6x:B (1.525) BS03 ZDC ? GO:0030246 ... Q9HYN5 30830745
    30 6q6x:C (1.525) BS04 ZDC ? GO:0030246 ... Q9HYN5 30830745
    31 6q6x:D (1.525) BS03 ZDC ? GO:0030246 ... Q9HYN5 30830745
    32 6q77:A (2.002) BS03 ZDC ? GO:0030246 ... Q9HYN5 30830745
    33 6q79:A (2.009) BS03 ZDC ? GO:0030246 ... Q9HYN5 30830745
    34 6q79:B (2.009) BS03 ZDC ? GO:0030246 ... Q9HYN5 30830745
    35 6q79:C (2.009) BS04 ZDC ? GO:0030246 ... Q9HYN5 30830745
    36 6q79:D (2.009) BS03 ZDC ? GO:0030246 ... Q9HYN5 30830745
    37 6q85:A (1.99) BS03 ZDC ? GO:0030246 ... Q9HYN5 30830745
    38 6q85:B (1.99) BS03 ZDC ? GO:0030246 ... Q9HYN5 30830745
    39 6q85:C (1.99) BS03 ZDC ? GO:0030246 ... Q9HYN5 30830745
    40 6q85:D (1.99) BS03 ZDC ? GO:0030246 ... Q9HYN5 30830745
    41 6q86:A (2.008) BS03 ZDC ? GO:0030246 ... Q9HYN5 30830745
    42 6q86:B (2.008) BS03 ZDC ? GO:0030246 ... Q9HYN5 30830745
    43 6q87:A (2.541) BS04 ZDC ? GO:0030246 ... Q9HYN5 30830745
    44 6q8d:A (1.63) BS03 ZDC ? GO:0030246 ... Q9HYN5 30830745
    45 6q8g:A (1.19) BS04 ZDC ? GO:0030246 ... Q9HYN5 30830745
    46 6q8g:B (1.19) BS03 ZDC ? GO:0030246 ... Q9HYN5 30830745
    47 6q8g:C (1.19) BS03 ZDC ? GO:0030246 ... Q9HYN5 30830745
    48 6q8g:D (1.19) BS01 ZDC ? GO:0030246 ... Q9HYN5 30830745
    49 6q8h:A (1.707) BS04 ZDC ? GO:0030246 ... Q9HYN5 30830745
    50 6s5p:A (1.46) BS03 ZDC ? GO:0030246 ... Q9HYN5 30830745
    51 6s5p:B (1.46) BS03 ZDC ? GO:0030246 ... Q9HYN5 30830745
    52 6s5p:C (1.46) BS03 ZDC ? GO:0030246 ... Q9HYN5 30830745
    53 6s5p:D (1.46) BS02 ZDC ? GO:0030246 ... Q9HYN5 30830745
    54 6s5r:A (2.076) BS03 ZDC ? GO:0030246 ... Q9HYN5 N/A
    55 6s5r:B (2.076) BS02 ZDC ? GO:0030246 ... Q9HYN5 N/A
    56 6s5r:C (2.076) BS03 ZDC ? GO:0030246 ... Q9HYN5 N/A
    57 6s5r:D (2.076) BS03 ZDC ? GO:0030246 ... Q9HYN5 N/A
    58 6s5s:A (1.433) BS03 ZDC ? GO:0030246 ... Q9HYN5 N/A
    59 6s7g:A (1.841) BS03 ZDC ? GO:0030246 ... Q9HYN5 N/A
    60 6s7g:B (1.841) BS03 ZDC ? GO:0030246 ... Q9HYN5 N/A
    61 6s7g:C (1.841) BS04 ZDC ? GO:0030246 ... Q9HYN5 N/A
    62 6s7g:D (1.841) BS03 ZDC ? GO:0030246 ... Q9HYN5 N/A
    63 6y0u:A (1.489) BS03 ZDC ? GO:0030246 ... Q9HYN5 34977576
    64 6y0u:B (1.489) BS03 ZDC ? GO:0030246 ... Q9HYN5 34977576
    65 6y0u:C (1.489) BS03 ZDC ? GO:0030246 ... Q9HYN5 34977576
    66 6y0u:D (1.489) BS03 ZDC ? GO:0030246 ... Q9HYN5 34977576
    67 6y0v:A (1.98) BS03 ZDC ? GO:0030246 ... Q9HYN5 34977576
    68 6y0v:B (1.98) BS03 ZDC ? GO:0030246 ... Q9HYN5 34977576
    69 6y0v:C (1.98) BS03 ZDC ? GO:0030246 ... Q9HYN5 34977576
    70 6y0v:D (1.98) BS03 ZDC ? GO:0030246 ... Q9HYN5 34977576
    71 6y0w:A (2.06) BS03 ZDC ? GO:0030246 ... Q9HYN5 N/A
    72 6y0w:B (2.06) BS04 ZDC ? GO:0030246 ... Q9HYN5 N/A
    73 6y0x:A (2.425) BS01 ZDC ? GO:0030246 ... A0A0S4TLR1 N/A
    74 6y0x:A (2.425) BS02 ZDC ? GO:0030246 ... A0A0S4TLR1 N/A
    75 6y0x:A (2.425) BS03 ZDC ? GO:0030246 ... A0A0S4TLR1 N/A
    76 6y0x:B (2.425) BS02 ZDC ? GO:0030246 ... A0A0S4TLR1 N/A
    77 6y0x:B (2.425) BS03 ZDC ? GO:0030246 ... A0A0S4TLR1 N/A
    78 6y0x:B (2.425) BS04 ZDC ? GO:0030246 ... A0A0S4TLR1 N/A
    79 6y0x:C (2.425) BS03 ZDC ? GO:0030246 ... A0A0S4TLR1 N/A
    80 6y0x:C (2.425) BS04 ZDC ? GO:0030246 ... A0A0S4TLR1 N/A
    81 6y0x:D (2.425) BS02 ZDC ? GO:0030246 ... A0A0S4TLR1 N/A
    82 6y0x:D (2.425) BS03 ZDC ? GO:0030246 ... A0A0S4TLR1 N/A
    83 6y0x:E (2.425) BS02 ZDC ? GO:0030246 ... A0A0S4TLR1 N/A
    84 6y0x:E (2.425) BS03 ZDC ? GO:0030246 ... A0A0S4TLR1 N/A
    85 6y0x:E (2.425) BS04 ZDC ? GO:0030246 ... A0A0S4TLR1 N/A
    86 6y0x:F (2.425) BS03 ZDC ? GO:0030246 ... A0A0S4TLR1 N/A
    87 6y0x:F (2.425) BS04 ZDC ? GO:0030246 ... A0A0S4TLR1 N/A
    88 7nef:A (1.51) BS03 ZDC ? GO:0030246 ... Q9HYN5 34977576
    89 7nef:B (1.51) BS03 ZDC ? GO:0030246 ... Q9HYN5 34977576
    90 7nef:C (1.51) BS04 ZDC ? GO:0030246 ... Q9HYN5 34977576
    91 7nef:D (1.51) BS03 ZDC ? GO:0030246 ... Q9HYN5 34977576
    92 7nef:E (1.51) BS03 ZDC ? GO:0030246 ... Q9HYN5 34977576
    93 7nef:F (1.51) BS03 ZDC ? GO:0030246 ... Q9HYN5 34977576
    94 7nef:G (1.51) BS03 ZDC ? GO:0030246 ... Q9HYN5 34977576
    95 7nef:H (1.51) BS03 ZDC ? GO:0030246 ... Q9HYN5 34977576
    96 7new:A (2.02) BS04 ZDC ? GO:0030246 ... Q9HYN5 34977576
    97 7new:B (2.02) BS03 ZDC ? GO:0030246 ... Q9HYN5 34977576
    98 7new:C (2.02) BS04 ZDC ? GO:0030246 ... Q9HYN5 34977576
    99 7new:D (2.02) BS03 ZDC ? GO:0030246 ... Q9HYN5 34977576
    100 8an9:A (1.273) BS04 ZDC ? GO:0030246 ... Q9HYN5 37227046
    101 8an9:B (1.273) BS04 ZDC ? GO:0030246 ... Q9HYN5 37227046
    102 8an9:C (1.273) BS03 ZDC ? GO:0030246 ... Q9HYN5 37227046
    103 8an9:D (1.273) BS03 ZDC ? GO:0030246 ... Q9HYN5 37227046
    104 8ano:A (1.29) BS04 ZDC ? GO:0030246 ... Q9HYN5 37227046
    105 8ano:B (1.29) BS03 ZDC ? GO:0030246 ... Q9HYN5 37227046
    106 8ano:C (1.29) BS03 ZDC ? GO:0030246 ... Q9HYN5 37227046
    107 8ano:D (1.29) BS04 ZDC ? GO:0030246 ... Q9HYN5 37227046
    108 8anr:A (1.62) BS04 ZDC ? GO:0030246 ... Q9HYN5 37227046
    109 8anr:B (1.62) BS04 ZDC ? GO:0030246 ... Q9HYN5 37227046
    110 8aoo:A (1.18) BS04 ZDC ? GO:0030246 ... Q9HYN5 37227046
    111 8aoo:B (1.18) BS03 ZDC ? GO:0030246 ... Q9HYN5 37227046
    112 8aoo:C (1.18) BS03 ZDC ? GO:0030246 ... Q9HYN5 37227046
    113 8aoo:D (1.18) BS03 ZDC ? GO:0030246 ... Q9HYN5 37227046
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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