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BioLiP
Download all results in tab-seperated text for 15 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7pnb:A (3.46) BS01 YZT ? N/A Q4JBK8 36456543
    2 7pnb:C (3.46) BS01 YZT ? N/A Q4JBK8 36456543
    3 7pnb:D (3.46) BS01 YZT ? N/A Q4JBK8 36456543
    4 7pnb:E (3.46) BS02 YZT ? N/A Q4JBK8 36456543
    5 7pnb:F (3.46) BS01 YZT ? N/A Q4JBK8 36456543
    6 7pnb:G (3.46) BS01 YZT ? N/A Q4JBK8 36456543
    7 7pnb:H (3.46) BS01 YZT ? N/A Q4JBK8 36456543
    8 7pnb:I (3.46) BS01 YZT ? N/A Q4JBK8 36456543
    9 7yzs:AAA (1.8) BS01 YZT ? GO:0015768 ... A9CEY9 35341160
    10 8an3:AAA (3.9) BS01 YZT ? N/A Q4J6E5 38251732
    11 8rzl:A (2.65) BS01 YZT ? N/A Q4JBK8 N/A
    12 8rzl:B (2.65) BS01 YZT ? N/A Q4JBK8 N/A
    13 8rzl:C (2.65) BS01 YZT ? N/A Q4JBK8 N/A
    14 8rzl:D (2.65) BS01 YZT ? N/A Q4JBK8 N/A
    15 8rzl:E (2.65) BS01 YZT ? N/A Q4JBK8 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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