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BioLiP
Download all results in tab-seperated text for 4 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 4crj:A (2.0) BS04 YH5 N/A GO:0003848 ... N/A 25357262 MOAD: Kd=1.1uM
    PDBbind: -logKd/Ki=5.96, Kd=1.1uM
    2 4m5j:A (1.696) BS02 YH5 2.7.6.3 GO:0000287 ... P26281 24613625 MOAD: Kd=14.5uM
    PDBbind: -logKd/Ki=4.84, Kd=14.5uM
    BindingDB: IC50=44000nM, Kd=14500nM
    3 5u13:A (1.951) BS01 YH5 2.5.1.15 GO:0004156 ... P0AC13 29171692 PDBbind: -logKd/Ki=5.41, Kd=3.9uM
    BindingDB: Kd=3900nM
    4 5u13:B (1.951) BS01 YH5 2.5.1.15 GO:0004156 ... P0AC13 29171692 BindingDB: Kd=3900nM
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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