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BioLiP
Download all results in tab-seperated text for 7 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 2ydj:A (1.85) BS01 YDJ 2.7.11.1 GO:0000077 ... O14757 22551018 MOAD: ic50=0.005uM
    PDBbind: -logKd/Ki=8.30, IC50=5nM
    BindingDB: IC50=6.0nM, EC50=10nM
    2 2ydj:B (1.85) BS01 YDJ 2.7.11.1 GO:0000077 ... O14757 22551018 MOAD: ic50=0.005uM
    BindingDB: IC50=6.0nM, EC50=10nM
    3 4w9w:A (1.72) BS01 YDJ 2.7.11.1 GO:0004672 ... Q9NSY1 26853940 PDBbind: -logKd/Ki=7.48, Kd=33.1nM
    4 4w9w:A (1.72) BS02 YDJ 2.7.11.1 GO:0004672 ... Q9NSY1 26853940 PDBbind: -logKd/Ki=7.48, Kd=33.1nM
    5 5wil:A (2.2) BS01 YDJ 2.7.10.2 GO:0004672 ... O60674 30763067
    6 7cqe:A (2.69) BS01 YDJ 2.7.10.1 GO:0004672 ... Q12866 33114206
    7 7cqe:C (2.69) BS01 YDJ 2.7.10.1 GO:0004672 ... Q12866 33114206
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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