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BioLiP
Download all results in tab-seperated text for 33 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 4ci3:B (3.5) BS02 Y70 ? GO:0005634 ... P0CF65 25043012 PDBbind: -logKd/Ki=6.81, Kd=156.6nM
    2 4tzu:A (2.0) BS02 Y70 ? N/A Q8C7D2 N/A
    3 4tzu:B (2.0) BS02 Y70 ? N/A Q8C7D2 N/A
    4 4tzu:C (2.0) BS02 Y70 ? N/A Q8C7D2 N/A
    5 4tzu:D (2.0) BS02 Y70 ? N/A Q8C7D2 N/A
    6 4v2z:A (1.45) BS02 Y70 ? GO:0046872 ... A4TVL0 25448889 BindingDB: Ki=800nM
    7 4v2z:B (1.45) BS02 Y70 ? GO:0046872 ... A4TVL0 25448889 BindingDB: Ki=800nM
    8 4v2z:C (1.45) BS02 Y70 ? GO:0046872 ... A4TVL0 25448889 BindingDB: Ki=800nM
    9 6h0f:B (3.25) BS02 Y70 ? GO:0005515 ... Q96SW2 30385546 BindingDB: IC50=2000nM
    10 6h0f:C (3.25) BS01 Y70 ? N/A Q13422 30385546
    11 6h0f:E (3.25) BS02 Y70 ? GO:0005515 ... Q96SW2 30385546 BindingDB: IC50=2000nM
    12 6h0f:F (3.25) BS01 Y70 ? N/A Q13422 30385546
    13 6h0f:H (3.25) BS02 Y70 ? GO:0005515 ... Q96SW2 30385546 BindingDB: IC50=2000nM
    14 6h0f:I (3.25) BS01 Y70 ? N/A Q13422 30385546
    15 6h0f:K (3.25) BS02 Y70 ? GO:0005515 ... Q96SW2 30385546 BindingDB: IC50=2000nM
    16 6h0f:L (3.25) BS01 Y70 ? N/A Q13422 30385546
    17 6h0g:B (4.25) BS02 Y70 ? GO:0005515 ... Q96SW2 30385546 BindingDB: IC50=2000nM
    18 6h0g:C (4.25) BS01 Y70 ? N/A Q9BU19 30385546
    19 6h0g:E (4.25) BS02 Y70 ? GO:0005515 ... Q96SW2 30385546 BindingDB: IC50=2000nM
    20 6h0g:F (4.25) BS01 Y70 ? N/A Q9BU19 30385546
    21 6uml:C (3.58) BS03 Y70 ? GO:0005515 ... Q96SW2 32251415 BindingDB: IC50=2000nM
    22 8d81:B (3.9) BS02 Y70 ? GO:0005515 ... Q96SW2 36378961
    23 8oiz:B (2.5) BS02 Y70 ? GO:0005515 ... Q96SW2 37418539
    24 8tnp:B (3.3) BS02 Y70 ? GO:0005515 ... Q96SW2 38484051
    25 8tnp:C (3.3) BS01 Y70 ? GO:0005515 ... P0AEX9
    Q13422    		 38484051
    26 8u16:A (2.9) BS02 Y70 ? N/A Q96SW2 38086859
    27 8u16:C (2.9) BS01 Y70 ? N/A Q9UJQ4 38086859
    28 8u16:D (2.9) BS02 Y70 ? N/A Q96SW2 38086859
    29 8u16:F (2.9) BS01 Y70 ? N/A Q9UJQ4 38086859
    30 8u17:A (3.1) BS02 Y70 ? N/A Q96SW2 38086859
    31 8u17:C (3.1) BS01 Y70 ? N/A Q9UJQ4 38086859
    32 8u17:D (3.1) BS02 Y70 ? N/A Q96SW2 38086859
    33 8u17:F (3.1) BS01 Y70 ? N/A Q9UJQ4 38086859
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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