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BioLiP
Download all results in tab-seperated text for 24 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8foi:A (2.5) BS02 Y4B ? GO:0004888 ... P62812 37730991
    2 8foi:B (2.5) BS02 Y4B ? GO:0004888 ... P63137 37730991
    3 8foi:C (2.5) BS02 Y4B ? GO:0004888 ... P62812 37730991
    4 8foi:E (2.5) BS01 Y4B ? GO:0004888 ... P63137 37730991
    5 8g4n:A (2.67) BS01 Y4B ? GO:0004888 ... P62812 37730991
    6 8g4n:B (2.67) BS02 Y4B ? GO:0004888 ... P63137 37730991
    7 8g4n:C (2.67) BS04 Y4B ? GO:0004888 ... P62812 37730991
    8 8g4n:E (2.67) BS01 Y4B ? GO:0004888 ... P63137 37730991
    9 8g4x:A (2.56) BS02 Y4B ? GO:0004888 ... P62812 37730991
    10 8g4x:B (2.56) BS02 Y4B ? GO:0004888 ... P63137 37730991
    11 8g4x:C (2.56) BS03 Y4B ? GO:0004888 ... P26049 37730991
    12 8g4x:E (2.56) BS01 Y4B ? GO:0004888 ... P63137 37730991
    13 8g5f:A (2.64) BS02 Y4B ? GO:0004888 ... P26049 37730991
    14 8g5f:B (2.64) BS02 Y4B ? GO:0004888 ... P63137 37730991
    15 8g5f:C (2.64) BS02 Y4B ? GO:0004888 ... P62812 37730991
    16 8g5f:E (2.64) BS01 Y4B ? GO:0004888 ... P63137 37730991
    17 8g5g:A (2.94) BS02 Y4B ? GO:0004888 ... P62812 37730991
    18 8g5g:E (2.94) BS01 Y4B ? GO:0004888 ... P63137 37730991
    19 8g5h:A (2.89) BS03 Y4B ? GO:0004888 ... P26049 37730991
    20 8g5h:E (2.89) BS02 Y4B ? GO:0004888 ... P63137 37730991
    21 8si9:A (2.98) BS01 Y4B ? GO:0004888 ... P47870 37607940
    22 8si9:B (2.98) BS01 Y4B ? GO:0004888 ... P14867 37607940
    23 8si9:C (2.98) BS02 Y4B ? GO:0004888 ... P47870 37607940
    24 8si9:D (2.98) BS02 Y4B ? GO:0004888 ... P14867 37607940
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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