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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 1663 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    401 6uza:B (3.08) BS01 Y01 ? GO:0005216 ... Q9Y210 32149605
    402 6uza:B (3.08) BS04 Y01 ? GO:0005216 ... Q9Y210 32149605
    403 6uza:C (3.08) BS01 Y01 ? GO:0005216 ... Q9Y210 32149605
    404 6uza:C (3.08) BS04 Y01 ? GO:0005216 ... Q9Y210 32149605
    405 6uza:D (3.08) BS01 Y01 ? GO:0005216 ... Q9Y210 32149605
    406 6uza:D (3.08) BS04 Y01 ? GO:0005216 ... Q9Y210 32149605
    407 6v3h:A (3.5) BS01 Y01 ? GO:0005319 ... Q6T3U3 N/A
    408 6vja:C (3.3) BS01 Y01 ? GO:0016020 ... P11836 32079680
    409 6vja:D (3.3) BS01 Y01 ? GO:0016020 ... P11836 32079680
    410 6vja:D (3.3) BS02 Y01 ? GO:0016020 ... P11836 32079680
    411 6wjc:A (2.55) BS01 Y01 3.2.1.17 GO:0003796 ... D9IEF7
    P11229    		 32646996
    412 6wjc:A (2.55) BS02 Y01 3.2.1.17 GO:0003796 ... D9IEF7
    P11229    		 32646996
    413 6wjc:A (2.55) BS03 Y01 3.2.1.17 GO:0003796 ... D9IEF7
    P11229    		 32646996
    414 6xe6:A (4.53) BS01 Y01 ? GO:0016020 ... Q96F81 32646883
    415 6xe6:A (4.53) BS02 Y01 ? GO:0016020 ... Q96F81 32646883
    416 6xe6:A (4.53) BS03 Y01 ? GO:0016020 ... Q96F81 32646883
    417 6xe6:A (4.53) BS04 Y01 ? GO:0016020 ... Q96F81 32646883
    418 6xe6:A (4.53) BS05 Y01 ? GO:0016020 ... Q96F81 32646883
    419 6xev:A (3.5) BS02 Y01 ? GO:0005242 ... P48542 N/A
    420 6xev:E (3.5) BS02 Y01 ? GO:0005242 ... P48542 N/A
    421 6xev:I (3.5) BS02 Y01 ? GO:0005242 ... P48542 N/A
    422 6xev:M (3.5) BS02 Y01 ? GO:0005242 ... P48542 N/A
    423 6xiw:A (2.8) BS01 Y01 ? GO:0005216 ... Q8IZF0 32698188
    424 6xiw:A (2.8) BS02 Y01 ? GO:0005216 ... Q8IZF0 32698188
    425 6xiw:A (2.8) BS03 Y01 ? GO:0005216 ... Q8IZF0 32698188
    426 6y90:A (3.69) BS01 Y01 ? GO:0016020 ... P11836 32792392
    427 6y90:A (3.69) BS02 Y01 ? GO:0016020 ... P11836 32792392
    428 6y90:B (3.69) BS01 Y01 ? GO:0016020 ... P11836 32792392
    429 6y90:B (3.69) BS02 Y01 ? GO:0016020 ... P11836 32792392
    430 6y90:B (3.69) BS03 Y01 ? GO:0016020 ... P11836 32792392
    431 6y90:B (3.69) BS04 Y01 ? GO:0016020 ... P11836 32792392
    432 6y92:A (4.73) BS01 Y01 ? GO:0016020 ... P11836 32792392
    433 6y92:B (4.73) BS01 Y01 ? GO:0016020 ... P11836 32792392
    434 6y92:B (4.73) BS02 Y01 ? GO:0016020 ... P11836 32792392
    435 7ad3:A (3.3) BS02 Y01 ? GO:0000750 ... D6VTK4 33268889
    436 7ad3:B (3.3) BS03 Y01 ? GO:0000750 ... D6VTK4 33268889
    437 7ad3:B (3.3) BS04 Y01 ? GO:0000750 ... D6VTK4 33268889
    438 7cfs:A (3.56) BS01 Y01 ? GO:0005272 ... P78348 32915133
    439 7cfs:B (3.56) BS01 Y01 ? GO:0005272 ... P78348 32915133
    440 7cfs:C (3.56) BS01 Y01 ? GO:0005272 ... P78348 32915133
    441 7d4p:A (2.7) BS02 Y01 ? GO:0005216 ... Q9UL62 33683200
    442 7d4p:B (2.7) BS02 Y01 ? GO:0005216 ... Q9UL62 33683200
    443 7d4p:C (2.7) BS02 Y01 ? GO:0005216 ... Q9UL62 33683200
    444 7d4p:D (2.7) BS03 Y01 ? GO:0005216 ... Q9UL62 33683200
    445 7d4q:A (2.74) BS01 Y01 ? GO:0005216 ... Q9UL62 33683200
    446 7d4q:B (2.74) BS01 Y01 ? GO:0005216 ... Q9UL62 33683200
    447 7d4q:C (2.74) BS01 Y01 ? GO:0005216 ... Q9UL62 33683200
    448 7d4q:D (2.74) BS02 Y01 ? GO:0005216 ... Q9UL62 33683200
    449 7d76:R (3.1) BS01 Y01 ? GO:0004888 ... Q86Y34 33408414
    450 7d77:R (2.9) BS01 Y01 ? GO:0004888 ... Q86Y34 33408414
    451 7dny:A (3.4) BS01 Y01 7.6.2.5 GO:0000139 ... Q9NP58 35950458
    452 7dny:A (3.4) BS02 Y01 7.6.2.5 GO:0000139 ... Q9NP58 35950458
    453 7dny:A (3.4) BS03 Y01 7.6.2.5 GO:0000139 ... Q9NP58 35950458
    454 7dny:B (3.4) BS02 Y01 7.6.2.5 GO:0000139 ... Q9NP58 35950458
    455 7dny:B (3.4) BS03 Y01 7.6.2.5 GO:0000139 ... Q9NP58 35950458
    456 7dnz:A (3.6) BS03 Y01 7.6.2.5 GO:0000139 ... Q9NP58 35950458
    457 7dnz:B (3.6) BS04 Y01 7.6.2.5 GO:0000139 ... Q9NP58 35950458
    458 7dnz:B (3.6) BS05 Y01 7.6.2.5 GO:0000139 ... Q9NP58 35950458
    459 7dsk:B (2.9) BS02 Y01 ? GO:0002720 ... Q01650 33758168
    460 7dsk:B (2.9) BS03 Y01 ? GO:0002720 ... Q01650 33758168
    461 7dsn:A (3.1) BS01 Y01 ? GO:0005975 ... P08195 33758168
    462 7dsn:B (3.1) BS02 Y01 ? GO:0002720 ... Q01650 33758168
    463 7dsn:B (3.1) BS03 Y01 ? GO:0002720 ... Q01650 33758168
    464 7dsq:B (3.4) BS02 Y01 ? GO:0002720 ... Q01650 33758168
    465 7dxb:A (2.7) BS01 Y01 ? GO:0005216 ... Q13507 35051376
    466 7dxb:A (2.7) BS02 Y01 ? GO:0005216 ... Q13507 35051376
    467 7dxb:B (2.7) BS02 Y01 ? GO:0005216 ... Q13507 35051376
    468 7dxb:B (2.7) BS03 Y01 ? GO:0005216 ... Q13507 35051376
    469 7dxb:C (2.7) BS02 Y01 ? GO:0005216 ... Q13507 35051376
    470 7dxb:C (2.7) BS03 Y01 ? GO:0005216 ... Q13507 35051376
    471 7dxb:D (2.7) BS03 Y01 ? GO:0005216 ... Q13507 35051376
    472 7dxb:D (2.7) BS04 Y01 ? GO:0005216 ... Q13507 35051376
    473 7dxc:A (3.06) BS01 Y01 ? GO:0005216 ... Q13507 35051376
    474 7dxc:A (3.06) BS03 Y01 ? GO:0005216 ... Q13507 35051376
    475 7dxc:A (3.06) BS05 Y01 ? GO:0005216 ... Q13507 35051376
    476 7dxc:B (3.06) BS01 Y01 ? GO:0005216 ... Q13507 35051376
    477 7dxc:B (3.06) BS03 Y01 ? GO:0005216 ... Q13507 35051376
    478 7dxc:B (3.06) BS05 Y01 ? GO:0005216 ... Q13507 35051376
    479 7dxc:C (3.06) BS01 Y01 ? GO:0005216 ... Q13507 35051376
    480 7dxc:C (3.06) BS03 Y01 ? GO:0005216 ... Q13507 35051376
    481 7dxc:C (3.06) BS05 Y01 ? GO:0005216 ... Q13507 35051376
    482 7dxc:D (3.06) BS01 Y01 ? GO:0005216 ... Q13507 35051376
    483 7dxc:D (3.06) BS03 Y01 ? GO:0005216 ... Q13507 35051376
    484 7dxc:D (3.06) BS05 Y01 ? GO:0005216 ... Q13507 35051376
    485 7dxd:A (3.9) BS01 Y01 ? GO:0005216 ... Q13507 35051376
    486 7dxd:B (3.9) BS01 Y01 ? GO:0005216 ... Q13507 35051376
    487 7dxd:C (3.9) BS01 Y01 ? GO:0005216 ... Q13507 35051376
    488 7dxd:D (3.9) BS01 Y01 ? GO:0005216 ... Q13507 35051376
    489 7dxe:A (3.2) BS01 Y01 ? GO:0005216 ... Q13507 35051376
    490 7dxe:A (3.2) BS03 Y01 ? GO:0005216 ... Q13507 35051376
    491 7dxe:A (3.2) BS05 Y01 ? GO:0005216 ... Q13507 35051376
    492 7dxe:B (3.2) BS02 Y01 ? GO:0005216 ... Q13507 35051376
    493 7dxe:B (3.2) BS04 Y01 ? GO:0005216 ... Q13507 35051376
    494 7dxe:B (3.2) BS06 Y01 ? GO:0005216 ... Q13507 35051376
    495 7dxe:C (3.2) BS01 Y01 ? GO:0005216 ... Q13507 35051376
    496 7dxe:C (3.2) BS04 Y01 ? GO:0005216 ... Q13507 35051376
    497 7dxe:C (3.2) BS06 Y01 ? GO:0005216 ... Q13507 35051376
    498 7dxe:D (3.2) BS01 Y01 ? GO:0005216 ... Q13507 35051376
    499 7dxe:D (3.2) BS03 Y01 ? GO:0005216 ... Q13507 35051376
    500 7dxe:D (3.2) BS06 Y01 ? GO:0005216 ... Q13507 35051376
    501 7dxf:A (2.9) BS03 Y01 ? GO:0005216 ... Q9Y210 35051376
    502 7dxf:A (2.9) BS06 Y01 ? GO:0005216 ... Q9Y210 35051376
    503 7dxf:A (2.9) BS08 Y01 ? GO:0005216 ... Q9Y210 35051376
    504 7dxf:B (2.9) BS04 Y01 ? GO:0005216 ... Q9Y210 35051376
    505 7dxf:B (2.9) BS07 Y01 ? GO:0005216 ... Q9Y210 35051376
    506 7dxf:B (2.9) BS09 Y01 ? GO:0005216 ... Q9Y210 35051376
    507 7dxf:C (2.9) BS04 Y01 ? GO:0005216 ... Q9Y210 35051376
    508 7dxf:C (2.9) BS07 Y01 ? GO:0005216 ... Q9Y210 35051376
    509 7dxf:C (2.9) BS09 Y01 ? GO:0005216 ... Q9Y210 35051376
    510 7dxf:D (2.9) BS04 Y01 ? GO:0005216 ... Q9Y210 35051376
    511 7dxf:D (2.9) BS07 Y01 ? GO:0005216 ... Q9Y210 35051376
    512 7dxf:D (2.9) BS10 Y01 ? GO:0005216 ... Q9Y210 35051376
    513 7dxg:A (2.9) BS03 Y01 ? GO:0005216 ... Q9Y210 35051376
    514 7dxg:A (2.9) BS06 Y01 ? GO:0005216 ... Q9Y210 35051376
    515 7dxg:A (2.9) BS07 Y01 ? GO:0005216 ... Q9Y210 35051376
    516 7dxg:A (2.9) BS09 Y01 ? GO:0005216 ... Q9Y210 35051376
    517 7dxg:B (2.9) BS03 Y01 ? GO:0005216 ... Q9Y210 35051376
    518 7dxg:B (2.9) BS06 Y01 ? GO:0005216 ... Q9Y210 35051376
    519 7dxg:B (2.9) BS07 Y01 ? GO:0005216 ... Q9Y210 35051376
    520 7dxg:B (2.9) BS09 Y01 ? GO:0005216 ... Q9Y210 35051376
    521 7dxg:C (2.9) BS03 Y01 ? GO:0005216 ... Q9Y210 35051376
    522 7dxg:C (2.9) BS06 Y01 ? GO:0005216 ... Q9Y210 35051376
    523 7dxg:C (2.9) BS09 Y01 ? GO:0005216 ... Q9Y210 35051376
    524 7dxg:C (2.9) BS10 Y01 ? GO:0005216 ... Q9Y210 35051376
    525 7dxg:D (2.9) BS03 Y01 ? GO:0005216 ... Q9Y210 35051376
    526 7dxg:D (2.9) BS06 Y01 ? GO:0005216 ... Q9Y210 35051376
    527 7dxg:D (2.9) BS09 Y01 ? GO:0005216 ... Q9Y210 35051376
    528 7dxg:D (2.9) BS10 Y01 ? GO:0005216 ... Q9Y210 35051376
    529 7e1z:A (3.2) BS06 Y01 7.2.2.13 GO:0000166 ... P05023 35803952
    530 7e1z:A (3.2) BS07 Y01 7.2.2.13 GO:0000166 ... P05023 35803952
    531 7e1z:A (3.2) BS08 Y01 7.2.2.13 GO:0000166 ... P05023 35803952
    532 7e1z:A (3.2) BS09 Y01 7.2.2.13 GO:0000166 ... P05023 35803952
    533 7e1z:A (3.2) BS10 Y01 7.2.2.13 GO:0000166 ... P05023 35803952
    534 7e1z:B (3.2) BS01 Y01 ? GO:0001671 ... P05026 35803952
    535 7e1z:C (3.2) BS01 Y01 ? GO:0001671 ... P54710 35803952
    536 7e20:A (2.7) BS05 Y01 7.2.2.13 GO:0000166 ... P05023 35803952
    537 7e20:A (2.7) BS06 Y01 7.2.2.13 GO:0000166 ... P05023 35803952
    538 7e20:A (2.7) BS07 Y01 7.2.2.13 GO:0000166 ... P05023 35803952
    539 7e20:B (2.7) BS01 Y01 ? GO:0001671 ... P05026 35803952
    540 7e20:B (2.7) BS02 Y01 ? GO:0001671 ... P05026 35803952
    541 7e20:C (2.7) BS01 Y01 ? GO:0001671 ... P54710 35803952
    542 7e21:A (2.9) BS06 Y01 7.2.2.13 GO:0000166 ... P05023 35803952
    543 7e21:A (2.9) BS07 Y01 7.2.2.13 GO:0000166 ... P05023 35803952
    544 7e21:A (2.9) BS08 Y01 7.2.2.13 GO:0000166 ... P05023 35803952
    545 7e21:A (2.9) BS09 Y01 7.2.2.13 GO:0000166 ... P05023 35803952
    546 7e21:A (2.9) BS10 Y01 7.2.2.13 GO:0000166 ... P05023 35803952
    547 7e21:B (2.9) BS01 Y01 ? GO:0001671 ... P05026 35803952
    548 7e21:B (2.9) BS02 Y01 ? GO:0001671 ... P05026 35803952
    549 7e21:C (2.9) BS01 Y01 ? GO:0001671 ... P54710 35803952
    550 7e2g:D (3.61) BS01 Y01 ? GO:0016020 ... Q96F81 34845226
    551 7e2g:D (3.61) BS02 Y01 ? GO:0016020 ... Q96F81 34845226
    552 7e2g:D (3.61) BS03 Y01 ? GO:0016020 ... Q96F81 34845226
    553 7e2g:D (3.61) BS04 Y01 ? GO:0016020 ... Q96F81 34845226
    554 7e2g:D (3.61) BS05 Y01 ? GO:0016020 ... Q96F81 34845226
    555 7e2g:D (3.61) BS06 Y01 ? GO:0016020 ... Q96F81 34845226
    556 7e2g:D (3.61) BS07 Y01 ? GO:0016020 ... Q96F81 34845226
    557 7e2g:D (3.61) BS08 Y01 ? GO:0016020 ... Q96F81 34845226
    558 7e2h:E (3.68) BS01 Y01 ? GO:0016020 ... Q96F81 34845226
    559 7e2h:E (3.68) BS02 Y01 ? GO:0016020 ... Q96F81 34845226
    560 7e2h:E (3.68) BS03 Y01 ? GO:0016020 ... Q96F81 34845226
    561 7e2h:E (3.68) BS04 Y01 ? GO:0016020 ... Q96F81 34845226
    562 7e2i:D (4.07) BS01 Y01 ? GO:0005515 ... Q96F81 34845226
    563 7e2i:D (4.07) BS02 Y01 ? GO:0005515 ... Q96F81 34845226
    564 7e2i:D (4.07) BS03 Y01 ? GO:0005515 ... Q96F81 34845226
    565 7e2i:D (4.07) BS04 Y01 ? GO:0005515 ... Q96F81 34845226
    566 7e4t:A (3.0) BS01 Y01 ? GO:0005216 ... Q9UL62 33683200
    567 7e4t:A (3.0) BS05 Y01 ? GO:0005216 ... Q9UL62 33683200
    568 7e4t:B (3.0) BS01 Y01 ? GO:0005216 ... Q9UL62 33683200
    569 7e4t:B (3.0) BS05 Y01 ? GO:0005216 ... Q9UL62 33683200
    570 7e4t:C (3.0) BS01 Y01 ? GO:0005216 ... Q9UL62 33683200
    571 7e4t:C (3.0) BS05 Y01 ? GO:0005216 ... Q9UL62 33683200
    572 7e4t:D (3.0) BS01 Y01 ? GO:0005216 ... Q9UL62 33683200
    573 7e4t:D (3.0) BS02 Y01 ? GO:0005216 ... Q9UL62 33683200
    574 7jhj:R (3.2) BS01 Y01 ? GO:0005741 ... P03208 34216564
    575 7k4a:A (3.26) BS01 Y01 ? GO:0005216 ... Q9H1D0 33246965
    576 7k4a:A (3.26) BS02 Y01 ? GO:0005216 ... Q9H1D0 33246965
    577 7k4a:A (3.26) BS03 Y01 ? GO:0005216 ... Q9H1D0 33246965
    578 7k4a:B (3.26) BS01 Y01 ? GO:0005216 ... Q9H1D0 33246965
    579 7k4a:B (3.26) BS02 Y01 ? GO:0005216 ... Q9H1D0 33246965
    580 7k4a:B (3.26) BS03 Y01 ? GO:0005216 ... Q9H1D0 33246965
    581 7k4a:B (3.26) BS04 Y01 ? GO:0005216 ... Q9H1D0 33246965
    582 7k4a:C (3.26) BS01 Y01 ? GO:0005216 ... Q9H1D0 33246965
    583 7k4a:C (3.26) BS02 Y01 ? GO:0005216 ... Q9H1D0 33246965
    584 7k4a:C (3.26) BS03 Y01 ? GO:0005216 ... Q9H1D0 33246965
    585 7k4a:C (3.26) BS04 Y01 ? GO:0005216 ... Q9H1D0 33246965
    586 7k4a:D (3.26) BS01 Y01 ? GO:0005216 ... Q9H1D0 33246965
    587 7k4a:D (3.26) BS02 Y01 ? GO:0005216 ... Q9H1D0 33246965
    588 7k4a:D (3.26) BS03 Y01 ? GO:0005216 ... Q9H1D0 33246965
    589 7k4b:A (3.1) BS02 Y01 ? GO:0005216 ... Q9H1D0 33246965
    590 7k4b:A (3.1) BS04 Y01 ? GO:0005216 ... Q9H1D0 33246965
    591 7k4b:A (3.1) BS05 Y01 ? GO:0005216 ... Q9H1D0 33246965
    592 7k4b:B (3.1) BS02 Y01 ? GO:0005216 ... Q9H1D0 33246965
    593 7k4b:B (3.1) BS04 Y01 ? GO:0005216 ... Q9H1D0 33246965
    594 7k4b:B (3.1) BS05 Y01 ? GO:0005216 ... Q9H1D0 33246965
    595 7k4b:C (3.1) BS02 Y01 ? GO:0005216 ... Q9H1D0 33246965
    596 7k4b:C (3.1) BS03 Y01 ? GO:0005216 ... Q9H1D0 33246965
    597 7k4b:C (3.1) BS04 Y01 ? GO:0005216 ... Q9H1D0 33246965
    598 7k4b:D (3.1) BS01 Y01 ? GO:0005216 ... Q9H1D0 33246965
    599 7k4b:D (3.1) BS02 Y01 ? GO:0005216 ... Q9H1D0 33246965
    600 7k4b:D (3.1) BS03 Y01 ? GO:0005216 ... Q9H1D0 33246965
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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