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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 1663 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    201 6cnk:C (3.9) BS01 Y01 ? GO:0004888 ... P17787 29720657
    202 6cnk:C (3.9) BS02 Y01 ? GO:0004888 ... P17787 29720657
    203 6cnk:D (3.9) BS02 Y01 ? GO:0004888 ... P43681 29720657
    204 6cnk:D (3.9) BS03 Y01 ? GO:0004888 ... P43681 29720657
    205 6cnk:E (3.9) BS01 Y01 ? GO:0004888 ... P17787 29720657
    206 6cnk:E (3.9) BS02 Y01 ? GO:0004888 ... P17787 29720657
    207 6d6t:A (3.86) BS02 Y01 ? GO:0004888 ... P47870 29950725
    208 6d6t:A (3.86) BS03 Y01 ? GO:0004888 ... P47870 29950725
    209 6d6t:B (3.86) BS02 Y01 ? GO:0004888 ... P14867 29950725
    210 6d6t:B (3.86) BS03 Y01 ? GO:0004888 ... P14867 29950725
    211 6d6t:D (3.86) BS03 Y01 ? GO:0004888 ... P14867 29950725
    212 6d6u:C (3.92) BS02 Y01 ? GO:0004888 ... P47870 29950725
    213 6d6u:C (3.92) BS03 Y01 ? GO:0004888 ... P47870 29950725
    214 6d6u:D (3.92) BS02 Y01 ? GO:0004888 ... P14867 29950725
    215 6d6u:E (3.92) BS03 Y01 ? GO:0004888 ... P18507 29950725
    216 6dmb:A (3.9) BS01 Y01 ? GO:0000122 ... Q13635 29954986
    217 6dmb:A (3.9) BS02 Y01 ? GO:0000122 ... Q13635 29954986
    218 6dmy:A (3.6) BS01 Y01 ? GO:0000122 ... Q13635 29954986
    219 6dmy:A (3.6) BS02 Y01 ? GO:0000122 ... Q13635 29954986
    220 6dzv:A (4.2) BS02 Y01 ? GO:0016020 ... P31645 31019304
    221 6g1k:A (3.6) BS01 Y01 ? GO:0005216 ... U3N7D8 29717981
    222 6g1k:B (3.6) BS02 Y01 ? GO:0005216 ... U3N7D8 29717981
    223 6g1k:C (3.6) BS01 Y01 ? GO:0005216 ... U3N7D8 29717981
    224 6g1k:D (3.6) BS02 Y01 ? GO:0005216 ... U3N7D8 29717981
    225 6jzo:A (3.28) BS01 Y01 ? GO:0005216 ... Q9QUQ5 N/A
    226 6jzo:A (3.28) BS02 Y01 ? GO:0005216 ... Q9QUQ5 N/A
    227 6jzo:B (3.28) BS01 Y01 ? GO:0005216 ... Q9QUQ5 N/A
    228 6jzo:B (3.28) BS02 Y01 ? GO:0005216 ... Q9QUQ5 N/A
    229 6jzo:C (3.28) BS01 Y01 ? GO:0005216 ... Q9QUQ5 N/A
    230 6jzo:C (3.28) BS02 Y01 ? GO:0005216 ... Q9QUQ5 N/A
    231 6jzo:D (3.28) BS01 Y01 ? GO:0005216 ... Q9QUQ5 N/A
    232 6jzo:D (3.28) BS02 Y01 ? GO:0005216 ... Q9QUQ5 N/A
    233 6k7g:C (3.3) BS01 Y01 ? GO:0005198 ... Q9NV96 31416931
    234 6k7h:C (3.22) BS01 Y01 ? GO:0005198 ... Q9NV96 31416931
    235 6k7i:C (3.22) BS01 Y01 ? GO:0005198 ... Q9NV96 31416931
    236 6k7j:C (3.08) BS01 Y01 ? GO:0005198 ... Q9NV96 31416931
    237 6k7k:C (3.04) BS01 Y01 ? GO:0005198 ... Q9NV96 31416931
    238 6k7l:A (2.83) BS03 Y01 7.6.2.1 GO:0000166 ... Q9Y2Q0 31416931
    239 6k7l:C (2.83) BS01 Y01 ? GO:0005198 ... Q9NV96 31416931
    240 6k7m:C (2.95) BS01 Y01 ? GO:0005198 ... Q9NV96 31416931
    241 6k7n:A (2.84) BS02 Y01 7.6.2.1 GO:0000166 ... Q9Y2Q0 31416931
    242 6k7n:C (2.84) BS01 Y01 ? GO:0005198 ... Q9NV96 31416931
    243 6kzo:A (3.3) BS01 Y01 ? GO:0001508 ... O43497 31766050
    244 6kzo:A (3.3) BS02 Y01 ? GO:0001508 ... O43497 31766050
    245 6kzp:A (3.1) BS03 Y01 ? GO:0005216 ... O43497 31766050
    246 6kzp:A (3.1) BS04 Y01 ? GO:0005216 ... O43497 31766050
    247 6kzp:A (3.1) BS05 Y01 ? GO:0005216 ... O43497 31766050
    248 6lmt:A (2.66) BS01 Y01 ? N/A H2MCM1 32832629
    249 6lmt:A (2.66) BS02 Y01 ? N/A H2MCM1 32832629
    250 6lmt:A (2.66) BS03 Y01 ? N/A H2MCM1 32832629
    251 6lmt:A (2.66) BS04 Y01 ? N/A H2MCM1 32832629
    252 6lmt:A (2.66) BS05 Y01 ? N/A H2MCM1 32832629
    253 6lmt:B (2.66) BS01 Y01 ? N/A H2MCM1 32832629
    254 6lmt:B (2.66) BS02 Y01 ? N/A H2MCM1 32832629
    255 6lmt:B (2.66) BS03 Y01 ? N/A H2MCM1 32832629
    256 6lmt:B (2.66) BS04 Y01 ? N/A H2MCM1 32832629
    257 6lmt:B (2.66) BS05 Y01 ? N/A H2MCM1 32832629
    258 6lmt:C (2.66) BS01 Y01 ? N/A H2MCM1 32832629
    259 6lmt:C (2.66) BS02 Y01 ? N/A H2MCM1 32832629
    260 6lmt:C (2.66) BS03 Y01 ? N/A H2MCM1 32832629
    261 6lmt:C (2.66) BS04 Y01 ? N/A H2MCM1 32832629
    262 6lmt:C (2.66) BS05 Y01 ? N/A H2MCM1 32832629
    263 6lmt:D (2.66) BS01 Y01 ? N/A H2MCM1 32832629
    264 6lmt:D (2.66) BS02 Y01 ? N/A H2MCM1 32832629
    265 6lmt:D (2.66) BS03 Y01 ? N/A H2MCM1 32832629
    266 6lmt:D (2.66) BS04 Y01 ? N/A H2MCM1 32832629
    267 6lmt:D (2.66) BS05 Y01 ? N/A H2MCM1 32832629
    268 6lmt:E (2.66) BS01 Y01 ? N/A H2MCM1 32832629
    269 6lmt:E (2.66) BS02 Y01 ? N/A H2MCM1 32832629
    270 6lmt:E (2.66) BS03 Y01 ? N/A H2MCM1 32832629
    271 6lmt:E (2.66) BS04 Y01 ? N/A H2MCM1 32832629
    272 6lmt:E (2.66) BS05 Y01 ? N/A H2MCM1 32832629
    273 6lmt:F (2.66) BS01 Y01 ? N/A H2MCM1 32832629
    274 6lmt:F (2.66) BS02 Y01 ? N/A H2MCM1 32832629
    275 6lmt:F (2.66) BS03 Y01 ? N/A H2MCM1 32832629
    276 6lmt:F (2.66) BS04 Y01 ? N/A H2MCM1 32832629
    277 6lmt:F (2.66) BS05 Y01 ? N/A H2MCM1 32832629
    278 6lmt:G (2.66) BS01 Y01 ? N/A H2MCM1 32832629
    279 6lmt:G (2.66) BS02 Y01 ? N/A H2MCM1 32832629
    280 6lmt:G (2.66) BS03 Y01 ? N/A H2MCM1 32832629
    281 6lmt:G (2.66) BS04 Y01 ? N/A H2MCM1 32832629
    282 6lmt:G (2.66) BS05 Y01 ? N/A H2MCM1 32832629
    283 6lmt:H (2.66) BS01 Y01 ? N/A H2MCM1 32832629
    284 6lmt:H (2.66) BS02 Y01 ? N/A H2MCM1 32832629
    285 6lmt:H (2.66) BS03 Y01 ? N/A H2MCM1 32832629
    286 6lmt:H (2.66) BS04 Y01 ? N/A H2MCM1 32832629
    287 6lmt:H (2.66) BS05 Y01 ? N/A H2MCM1 32832629
    288 6m0z:A (2.88) BS01 Y01 ? GO:0016020 ... Q7K4Y6 33850134
    289 6m2r:A (2.802) BS02 Y01 ? GO:0016020 ... Q7K4Y6 33850134
    290 6m47:A (3.252) BS02 Y01 ? GO:0016020 ... Q7K4Y6 33850134
    291 6nf4:A (2.98) BS01 Y01 N/A GO:0015252 ... N/A 31160780
    292 6nf4:B (2.98) BS01 Y01 N/A GO:0015252 ... N/A 31160780
    293 6nf6:A (3.32) BS01 Y01 N/A GO:0015252 ... N/A 31160780
    294 6nf6:B (3.32) BS01 Y01 N/A GO:0015252 ... N/A 31160780
    295 6nt4:A (3.5) BS07 Y01 ? GO:0001518 ... D0E0C2
    Q15858    		 30733386
    296 6o6a:A (3.6) BS01 Y01 N/A GO:0005216 ... N/A 31488702
    297 6o6a:B (3.6) BS01 Y01 N/A GO:0005216 ... N/A 31488702
    298 6o6a:C (3.6) BS01 Y01 N/A GO:0005216 ... N/A 31488702
    299 6o6a:D (3.6) BS01 Y01 N/A GO:0005216 ... N/A 31488702
    300 6o6r:A (3.2) BS01 Y01 N/A GO:0005216 ... N/A 31488702
    301 6o6r:B (3.2) BS01 Y01 N/A GO:0005216 ... N/A 31488702
    302 6o6r:C (3.2) BS01 Y01 N/A GO:0005216 ... N/A 31488702
    303 6o6r:D (3.2) BS01 Y01 N/A GO:0005216 ... N/A 31488702
    304 6o72:A (3.0) BS01 Y01 N/A GO:0005216 ... N/A 31488702
    305 6o72:B (3.0) BS01 Y01 N/A GO:0005216 ... N/A 31488702
    306 6o72:C (3.0) BS01 Y01 N/A GO:0005216 ... N/A 31488702
    307 6o72:D (3.0) BS01 Y01 N/A GO:0005216 ... N/A 31488702
    308 6o77:A (3.2) BS02 Y01 N/A GO:0005216 ... N/A 31488702
    309 6o77:A (3.2) BS03 Y01 N/A GO:0005216 ... N/A 31488702
    310 6o77:A (3.2) BS04 Y01 N/A GO:0005216 ... N/A 31488702
    311 6o77:B (3.2) BS02 Y01 N/A GO:0005216 ... N/A 31488702
    312 6o77:B (3.2) BS03 Y01 N/A GO:0005216 ... N/A 31488702
    313 6o77:B (3.2) BS04 Y01 N/A GO:0005216 ... N/A 31488702
    314 6o77:C (3.2) BS02 Y01 N/A GO:0005216 ... N/A 31488702
    315 6o77:C (3.2) BS03 Y01 N/A GO:0005216 ... N/A 31488702
    316 6o77:C (3.2) BS04 Y01 N/A GO:0005216 ... N/A 31488702
    317 6o77:D (3.2) BS01 Y01 N/A GO:0005216 ... N/A 31488702
    318 6o77:D (3.2) BS03 Y01 N/A GO:0005216 ... N/A 31488702
    319 6o77:D (3.2) BS04 Y01 N/A GO:0005216 ... N/A 31488702
    320 6oij:R (3.3) BS02 Y01 ? GO:0004930 ... P11229 31073061
    321 6oij:R (3.3) BS03 Y01 ? GO:0004930 ... P11229 31073061
    322 6pv7:A (3.34) BS02 Y01 ? GO:0004888 ... P32297 31488329
    323 6pv7:A (3.34) BS03 Y01 ? GO:0004888 ... P32297 31488329
    324 6pv7:B (3.34) BS02 Y01 ? GO:0004888 ... P30926 31488329
    325 6pv7:B (3.34) BS03 Y01 ? GO:0004888 ... P30926 31488329
    326 6pv7:C (3.34) BS01 Y01 ? GO:0004888 ... P30926 31488329
    327 6pv7:C (3.34) BS02 Y01 ? GO:0004888 ... P30926 31488329
    328 6pv7:D (3.34) BS02 Y01 ? GO:0004888 ... P32297 31488329
    329 6pv7:E (3.34) BS01 Y01 ? GO:0004888 ... P30926 31488329
    330 6pv7:E (3.34) BS02 Y01 ? GO:0004888 ... P30926 31488329
    331 6pv8:A (3.87) BS02 Y01 ? GO:0004888 ... P32297 31488329
    332 6pv8:B (3.87) BS02 Y01 ? GO:0004888 ... P30926 31488329
    333 6pv8:B (3.87) BS03 Y01 ? GO:0004888 ... P30926 31488329
    334 6pv8:C (3.87) BS01 Y01 ? GO:0004888 ... P30926 31488329
    335 6pv8:C (3.87) BS02 Y01 ? GO:0004888 ... P30926 31488329
    336 6pv8:D (3.87) BS02 Y01 ? GO:0004888 ... P32297 31488329
    337 6pv8:E (3.87) BS02 Y01 ? GO:0004888 ... P30926 31488329
    338 6pv8:E (3.87) BS03 Y01 ? GO:0004888 ... P30926 31488329
    339 6qd5:A (2.398) BS01 Y01 ? GO:0005372 ... Q13336 N/A
    340 6rmg:A (3.4) BS01 Y01 ? GO:0006091 ... Q13635
    U6GSR1    		 31555730
    341 6rmg:A (3.4) BS02 Y01 ? GO:0006091 ... Q13635
    U6GSR1    		 31555730
    342 6rmg:A (3.4) BS03 Y01 ? GO:0006091 ... Q13635
    U6GSR1    		 31555730
    343 6rmg:A (3.4) BS04 Y01 ? GO:0006091 ... Q13635
    U6GSR1    		 31555730
    344 6rmg:A (3.4) BS05 Y01 ? GO:0006091 ... Q13635
    U6GSR1    		 31555730
    345 6rmg:A (3.4) BS06 Y01 ? GO:0006091 ... Q13635
    U6GSR1    		 31555730
    346 6rtw:A (1.9) BS01 Y01 ? N/A Q13635 31548691 PDBbind: -logKd/Ki=6.43, Kd=370nM
    347 6rv2:A (3.0) BS04 Y01 ? GO:0005252 ... O14649 32499642
    348 6rv2:A (3.0) BS05 Y01 ? GO:0005252 ... O14649 32499642
    349 6rv2:B (3.0) BS04 Y01 ? GO:0005252 ... O14649 32499642
    350 6rv2:B (3.0) BS06 Y01 ? GO:0005252 ... O14649 32499642
    351 6rv2:B (3.0) BS07 Y01 ? GO:0005252 ... O14649 32499642
    352 6rv2:C (3.0) BS05 Y01 ? GO:0005252 ... O14649 32499642
    353 6rv2:D (3.0) BS05 Y01 ? GO:0005252 ... O14649 32499642
    354 6rv2:D (3.0) BS06 Y01 ? GO:0005252 ... O14649 32499642
    355 6rv2:D (3.0) BS07 Y01 ? GO:0005252 ... O14649 32499642
    356 6rv3:A (2.9) BS04 Y01 ? GO:0005252 ... O14649 32499642
    357 6rv3:A (2.9) BS05 Y01 ? GO:0005252 ... O14649 32499642
    358 6rv3:A (2.9) BS08 Y01 ? GO:0005252 ... O14649 32499642
    359 6rv3:B (2.9) BS04 Y01 ? GO:0005252 ... O14649 32499642
    360 6rv3:B (2.9) BS07 Y01 ? GO:0005252 ... O14649 32499642
    361 6rv3:B (2.9) BS08 Y01 ? GO:0005252 ... O14649 32499642
    362 6rv3:C (2.9) BS05 Y01 ? GO:0005252 ... O14649 32499642
    363 6rv3:C (2.9) BS07 Y01 ? GO:0005252 ... O14649 32499642
    364 6rv3:D (2.9) BS05 Y01 ? GO:0005252 ... O14649 32499642
    365 6rv3:D (2.9) BS07 Y01 ? GO:0005252 ... O14649 32499642
    366 6rv3:D (2.9) BS08 Y01 ? GO:0005252 ... O14649 32499642
    367 6rv4:A (3.1) BS04 Y01 ? GO:0005252 ... O14649 32499642
    368 6rv4:A (3.1) BS05 Y01 ? GO:0005252 ... O14649 32499642
    369 6rv4:B (3.1) BS06 Y01 ? GO:0005252 ... O14649 32499642
    370 6rv4:B (3.1) BS07 Y01 ? GO:0005252 ... O14649 32499642
    371 6rv4:C (3.1) BS05 Y01 ? GO:0005252 ... O14649 32499642
    372 6rv4:C (3.1) BS07 Y01 ? GO:0005252 ... O14649 32499642
    373 6rv4:D (3.1) BS05 Y01 ? GO:0005252 ... O14649 32499642
    374 6rv4:D (3.1) BS07 Y01 ? GO:0005252 ... O14649 32499642
    375 6s3q:A (3.34) BS02 Y01 ? GO:0001662 ... P43005 N/A
    376 6s3q:B (3.34) BS02 Y01 ? GO:0001662 ... P43005 N/A
    377 6s3q:C (3.34) BS02 Y01 ? GO:0001662 ... P43005 N/A
    378 6sni:H (3.0) BS01 Y01 N/A N/A N/A 32103179
    379 6sni:X (3.0) BS01 Y01 2.4.1.267 GO:0005783 ... Q12001 32103179
    380 6sni:X (3.0) BS02 Y01 2.4.1.267 GO:0005783 ... Q12001 32103179
    381 6sni:X (3.0) BS03 Y01 2.4.1.267 GO:0005783 ... Q12001 32103179
    382 6tbu:A (3.16) BS01 Y01 ? GO:0005886 ... Q9VNJ5 32494603
    383 6tbu:A (3.16) BS02 Y01 ? GO:0005886 ... Q9VNJ5 32494603
    384 6tbu:A (3.16) BS03 Y01 ? GO:0005886 ... Q9VNJ5 32494603
    385 6tbu:A (3.16) BS04 Y01 ? GO:0005886 ... Q9VNJ5 32494603
    386 6tbu:A (3.16) BS05 Y01 ? GO:0005886 ... Q9VNJ5 32494603
    387 6tbu:A (3.16) BS06 Y01 ? GO:0005886 ... Q9VNJ5 32494603
    388 6tbu:A (3.16) BS07 Y01 ? GO:0005886 ... Q9VNJ5 32494603
    389 6tbu:A (3.16) BS08 Y01 ? GO:0005886 ... Q9VNJ5 32494603
    390 6ukj:A (3.3) BS01 Y01 ? GO:0005773 ... W7FI62 31776516
    391 6uz8:A (2.84) BS02 Y01 ? GO:0005216 ... Q9Y210 32149605
    392 6uz8:A (2.84) BS03 Y01 ? GO:0005216 ... Q9Y210 32149605
    393 6uz8:B (2.84) BS01 Y01 ? GO:0005216 ... Q9Y210 32149605
    394 6uz8:B (2.84) BS03 Y01 ? GO:0005216 ... Q9Y210 32149605
    395 6uz8:C (2.84) BS02 Y01 ? GO:0005216 ... Q9Y210 32149605
    396 6uz8:C (2.84) BS04 Y01 ? GO:0005216 ... Q9Y210 32149605
    397 6uz8:D (2.84) BS03 Y01 ? GO:0005216 ... Q9Y210 32149605
    398 6uz8:D (2.84) BS04 Y01 ? GO:0005216 ... Q9Y210 32149605
    399 6uza:A (3.08) BS03 Y01 ? GO:0005216 ... Q9Y210 32149605
    400 6uza:A (3.08) BS04 Y01 ? GO:0005216 ... Q9Y210 32149605
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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