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BioLiP
Download all results in tab-seperated text for 1027 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1001 8qy0:B (1.9) BS01 XYP N/A N/A P09850 39185686
    1002 8qy0:B (1.9) BS02 XYP N/A N/A P09850 39185686
    1003 8qy0:B (1.9) BS03 XYP N/A N/A P09850 39185686
    1004 8qy0:B (1.9) BS04 XYP N/A N/A P09850 39185686
    1005 8qy0:B (1.9) BS05 XYP N/A N/A P09850 39185686
    1006 8qy0:B (1.9) BS06 XYP N/A N/A P09850 39185686
    1007 8qy1:A (1.9) BS01 XYP N/A N/A P09850 39185686
    1008 8qy1:A (1.9) BS02 XYP N/A N/A P09850 39185686
    1009 8qy1:A (1.9) BS03 XYP N/A N/A P09850 39185686
    1010 8qy1:A (1.9) BS04 XYP N/A N/A P09850 39185686
    1011 8qy1:B (1.9) BS01 XYP N/A N/A P09850 39185686
    1012 8qy1:B (1.9) BS02 XYP N/A N/A P09850 39185686
    1013 8qy1:B (1.9) BS03 XYP N/A N/A P09850 39185686
    1014 8qy3:A (1.24) BS01 XYP N/A N/A P09850 39185686
    1015 8qy3:A (1.24) BS02 XYP N/A N/A P09850 39185686
    1016 8y1m:A (1.8) BS01 XYP 3.2.1.8 GO:0005576 ... P07528 38565938
    1017 8y1m:A (1.8) BS02 XYP 3.2.1.8 GO:0005576 ... P07528 38565938
    1018 8y1m:A (1.8) BS03 XYP 3.2.1.8 GO:0005576 ... P07528 38565938
    1019 8y1m:A (1.8) BS04 XYP 3.2.1.8 GO:0005576 ... P07528 38565938
    1020 8y1m:B (1.8) BS01 XYP 3.2.1.8 GO:0005576 ... P07528 38565938
    1021 8y1m:B (1.8) BS02 XYP 3.2.1.8 GO:0005576 ... P07528 38565938
    1022 8y1m:B (1.8) BS03 XYP 3.2.1.8 GO:0005576 ... P07528 38565938
    1023 8y1m:B (1.8) BS04 XYP 3.2.1.8 GO:0005576 ... P07528 38565938
    1024 8yyn:A (1.9) BS01 XYP 3.2.1.8 GO:0004553 ... I3VTR8 N/A
    1025 8yyn:B (1.9) BS01 XYP 3.2.1.8 GO:0004553 ... I3VTR8 N/A
    1026 8yyo:A (1.7) BS01 XYP 3.2.1.8 GO:0004553 ... I3VTR8 N/A
    1027 8yyo:B (1.7) BS01 XYP 3.2.1.8 GO:0004553 ... I3VTR8 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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