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BioLiP
Download all results in tab-seperated text for 5 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 2x6k:A (3.5) BS01 X6K 2.7.1.137 GO:0016301 ... Q9W1M7 20339072 PDBbind: -logKd/Ki=5.64, IC50=2300nM
    2 2x6k:B (3.5) BS01 X6K 2.7.1.137 GO:0016301 ... Q9W1M7 20339072
    3 4jt6:A (3.6) BS01 X6K 2.7.11.1 GO:0004674 ... P42345 23636326 BindingDB: IC50=19nM, Kd=12nM, Ki=19nM
    4 4jt6:B (3.6) BS01 X6K 2.7.11.1 GO:0004674 ... P42345 23636326 BindingDB: IC50=19nM, Kd=12nM, Ki=19nM
    5 4l23:A (2.501) BS01 X6K 2.7.11.1
    2.7.1.137
    2.7.1.153    		 GO:0001525 ... P42336 24900786 PDBbind: -logKd/Ki=7.75, IC50=17.9nM
    BindingDB: Kd=1.5nM, IC50=3.6nM
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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