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BioLiP
Download all results in tab-seperated text for 11 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 2x2n:A (2.6) BS02 X2N 1.14.13.70 GO:0004497 ... Q385E8 20386598
    2 2x2n:B (2.6) BS02 X2N 1.14.13.70 GO:0004497 ... Q385E8 20386598
    3 2x2n:C (2.6) BS02 X2N 1.14.13.70 GO:0004497 ... Q385E8 20386598
    4 2x2n:D (2.6) BS02 X2N 1.14.13.70 GO:0004497 ... Q385E8 20386598
    5 4j14:A (2.5) BS02 X2N 1.14.14.25 GO:0004497 ... Q9Y6A2 23604141 MOAD: Kd=30nM
    6 4ze1:A (2.05) BS02 X2N ? GO:0004497 ... A6ZSR0 27188873 MOAD: Kd=0.15uM
    7 5fsa:A (2.86) BS02 X2N 1.14.14.154 GO:0001766 ... P10613 28258218 BindingDB: Kd=81nM
    8 5fsa:B (2.86) BS02 X2N 1.14.14.154 GO:0001766 ... P10613 28258218 BindingDB: Kd=81nM
    9 5tl8:A (1.71) BS02 X2N ? GO:0004497 ... A0A2H4A2U9 N/A
    10 6e8q:A (2.2) BS02 X2N ? GO:0004497 ... A6ZSR0 30397057
    11 7niw:A (3.8) BS04 X2N 7.6.2.1 GO:0005515 ... P21439 34385322
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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