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BioLiP
Download all results in tab-seperated text for 7 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 5rxr:A (1.4) BS01 WKY 3.1.3.36
    3.1.3.56
    3.1.3.86    		 GO:0016791 ... Q92835 38309262
    2 5s5j:B (2.25) BS02 WKY ? GO:0000226 ... Q6B856 33951246
    3 5s5j:C (2.25) BS01 WKY 3.6.5.- GO:0000226 ... P81947 33951246
    4 5sa2:B (1.78) BS02 WKY 1.8.1.12 GO:0000166 ... Q389T8 35860359
    5 7g88:A (1.869) BS01 WKY 3.6.5.2 GO:0000902 ... P61586 N/A
    6 7g88:B (1.869) BS01 WKY ? GO:0005085 ... Q92974 N/A
    7 7h23:B (1.492) BS01 WKY 2.1.1.56
    2.1.1.57
    2.7.7.48
    3.4.21.91
    3.6.1.15
    3.6.4.13    		 GO:0003723 ... Q32ZE1 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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