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BioLiP
Download all results in tab-seperated text for 7 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1nu3:A (1.75) BS01 VPR 3.3.2.8 GO:0016787 ... Q9ZAG3 12773375 PDBbind: -logKd/Ki=4.00, Ki=100uM
    2 1nu3:B (1.75) BS01 VPR 3.3.2.8 GO:0016787 ... Q9ZAG3 12773375
    3 2cjp:B (1.95) BS01 VPR 3.3.2.3 GO:0003824 ... Q41415 16751602 MOAD: Ki=0.8mM
    4 3g0i:A (2.1) BS01 VPR 3.3.2.3 GO:0003824 ... Q9UR30 19469578 PDBbind: -logKd/Ki=3.60, Ki=250uM
    5 3g0i:B (2.1) BS01 VPR 3.3.2.3 GO:0003824 ... Q9UR30 19469578
    6 5aig:A (1.16) BS01 VPR N/A N/A N/A 26032250
    7 5aig:B (1.16) BS01 VPR N/A N/A N/A 26032250
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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