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BioLiP
Download all results in tab-seperated text for 97 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1bo6:A (2.1) BS01 VO4 2.8.2.4 GO:0004304 ... P49891 9765259
    2 1bo6:B (2.1) BS01 VO4 2.8.2.4 GO:0004304 ... P49891 9765259
    3 1j9l:A (1.9) BS03 VO4 3.1.3.5 GO:0000166 ... P96112 11524683
    4 1j9l:B (1.9) BS02 VO4 3.1.3.5 GO:0000166 ... P96112 11524683
    5 1mu9:A (2.05) BS01 VO4 3.1.4.- GO:0005634 ... Q9NUW8 12470949 BindingDB: IC50=4000nM
    6 1mu9:B (2.05) BS01 VO4 3.1.4.- GO:0005634 ... Q9NUW8 12470949 BindingDB: IC50=4000nM
    7 1nop:A (2.3) BS03 VO4 3.1.4.- GO:0005634 ... Q9NUW8 12618186 BindingDB: IC50=4000nM
    8 1nop:B (2.3) BS02 VO4 3.1.4.- GO:0005634 ... Q9NUW8 12618186 BindingDB: IC50=4000nM
    9 1rff:A (1.7) BS03 VO4 3.1.4.- GO:0005634 ... Q9NUW8 14761185 BindingDB: IC50=4000nM
    10 1rff:B (1.7) BS03 VO4 3.1.4.- GO:0005634 ... Q9NUW8 14761185 BindingDB: IC50=4000nM
    11 1rfi:A (2.2) BS03 VO4 3.1.4.- GO:0005634 ... Q9NUW8 14761185 BindingDB: IC50=4000nM
    12 1rfi:B (2.2) BS03 VO4 3.1.4.- GO:0005634 ... Q9NUW8 14761185 BindingDB: IC50=4000nM
    13 1rg1:A (2.1) BS02 VO4 3.1.4.- GO:0005634 ... Q9NUW8 14761185 BindingDB: IC50=4000nM
    14 1rg1:B (2.1) BS02 VO4 3.1.4.- GO:0005634 ... Q9NUW8 14761185 BindingDB: IC50=4000nM
    15 1rg2:A (2.1) BS02 VO4 3.1.4.- GO:0005634 ... Q9NUW8 14761185 BindingDB: IC50=4000nM
    16 1rg2:B (2.1) BS02 VO4 3.1.4.- GO:0005634 ... Q9NUW8 14761185 BindingDB: IC50=4000nM
    17 1rgt:A (2.0) BS02 VO4 3.1.4.- GO:0005634 ... Q9NUW8 14761185 BindingDB: IC50=4000nM
    18 1rgt:B (2.0) BS02 VO4 3.1.4.- GO:0005634 ... Q9NUW8 14761185 BindingDB: IC50=4000nM
    19 1rgu:A (2.22) BS02 VO4 3.1.4.- GO:0005634 ... Q9NUW8 14761185 BindingDB: IC50=4000nM
    20 1rgu:B (2.22) BS02 VO4 3.1.4.- GO:0005634 ... Q9NUW8 14761185 BindingDB: IC50=4000nM
    21 1rh0:A (2.3) BS02 VO4 3.1.4.- GO:0005634 ... Q9NUW8 14761185 BindingDB: IC50=4000nM
    22 1rh0:B (2.3) BS02 VO4 3.1.4.- GO:0005634 ... Q9NUW8 14761185 BindingDB: IC50=4000nM
    23 1rpt:A (3.0) BS01 VO4 3.1.3.2
    3.1.3.48
    3.1.3.5    		 GO:0003993 ... P20646 8168503
    24 1vnc:A (2.1) BS01 VO4 1.11.1.10 GO:0004601 ... P49053 8552646
    25 1vne:A (2.15) BS01 VO4 1.11.1.10 GO:0004601 ... P49053 10499093
    26 1vnf:A (2.35) BS01 VO4 1.11.1.10 GO:0004601 ... P49053 10499093
    27 1vng:A (2.2) BS01 VO4 1.11.1.10 GO:0004601 ... P49053 10499093
    28 1vnh:A (2.11) BS01 VO4 1.11.1.10 GO:0004601 ... P49053 10499093
    29 1vni:A (2.15) BS01 VO4 1.11.1.10 GO:0004601 ... P49053 10499093
    30 1vom:A (1.9) BS02 VO4 ? GO:0003774 ... P08799 8611530
    31 2azd:A (2.16) BS04 VO4 2.4.1.1 GO:0004645 ... P00490 18164678
    32 2azd:B (2.16) BS03 VO4 2.4.1.1 GO:0004645 ... P00490 18164678
    33 2b9s:A (2.27) BS04 VO4 5.6.2.1 GO:0003677 ... Q9GPZ9 16487540
    34 2d1g:A (1.75) BS01 VO4 3.1.3.2 GO:0016788 ... A0Q436 16899453
    35 2d1g:B (1.75) BS01 VO4 3.1.3.2 GO:0016788 ... A0Q436 16899453
    36 2f43:B (3.0) BS01 VO4 7.1.2.2 GO:0001525 ... P10719 16531409
    37 2gso:A (1.3) BS03 VO4 N/A N/A N/A 16893180
    38 2gso:B (1.3) BS03 VO4 N/A N/A N/A 16893180
    39 2i42:A (2.2) BS01 VO4 3.1.3.48 GO:0004725 ... P15273 N/A
    40 3f9b:A (1.42) BS01 VO4 3.1.3.48 GO:0004725 ... P15273 19140798
    41 3gp5:A (2.25) BS01 VO4 5.4.2.11 GO:0003824 ... Q3JWH7 21904048
    42 3gp5:B (2.25) BS01 VO4 5.4.2.11 GO:0003824 ... Q3JWH7 21904048
    43 3gw8:A (1.93) BS01 VO4 5.4.2.11 GO:0003824 ... Q3JWH7 21904048
    44 3gw8:A (1.93) BS02 VO4 5.4.2.11 GO:0003824 ... Q3JWH7 21904048
    45 3gw8:B (1.93) BS01 VO4 5.4.2.11 GO:0003824 ... Q3JWH7 21904048
    46 3gw8:B (1.93) BS02 VO4 5.4.2.11 GO:0003824 ... Q3JWH7 21904048
    47 3i7z:A (2.3) BS02 VO4 3.1.3.48 GO:0004725 ... P18031 20236928 BindingDB: IC50=2000nM
    48 3i80:A (2.25) BS01 VO4 3.1.3.48 GO:0004725 ... P18031 20236928 BindingDB: IC50=2000nM
    49 3igc:A (2.1) BS04 VO4 5.6.2.1 GO:0003677 ... P32989 20152159
    50 3mgv:B (2.29) BS04 VO4 ? GO:0003677 ... P06956 20462863
    51 3mgv:D (2.29) BS04 VO4 ? GO:0003677 ... P06956 20462863
    52 3myh:X (2.01) BS02 VO4 ? GO:0003774 ... P08799 20459085
    53 3omx:A (2.3366) BS01 VO4 3.1.3.16 GO:0004721 ... Q9VWE4 21204787
    54 3omx:B (2.3366) BS01 VO4 3.1.3.16 GO:0004721 ... Q9VWE4 21204787
    55 3omx:C (2.3366) BS01 VO4 3.1.3.16 GO:0004721 ... Q9VWE4 21204787
    56 3omx:D (2.3366) BS01 VO4 3.1.3.16 GO:0004721 ... Q9VWE4 21204787
    57 3q8y:A (2.7) BS02 VO4 2.7.4.6 GO:0004550 ... Q5HFV4 21745603
    58 3q8y:B (2.7) BS02 VO4 2.7.4.6 GO:0004550 ... Q5HFV4 21745603
    59 3q8y:C (2.7) BS01 VO4 2.7.4.6 GO:0004550 ... Q5HFV4 21745603
    60 3q8y:D (2.7) BS02 VO4 2.7.4.6 GO:0004550 ... Q5HFV4 21745603
    61 3q8y:E (2.7) BS02 VO4 2.7.4.6 GO:0004550 ... Q5HFV4 21745603
    62 3q8y:F (2.7) BS01 VO4 2.7.4.6 GO:0004550 ... Q5HFV4 21745603
    63 3q8y:G (2.7) BS02 VO4 2.7.4.6 GO:0004550 ... Q5HFV4 21745603
    64 3q8y:H (2.7) BS02 VO4 2.7.4.6 GO:0004550 ... Q5HFV4 21745603
    65 3rnt:A (1.8) BS01 VO4 4.6.1.24 GO:0001411 ... P00651 2514790
    66 3w36:A (1.97) BS01 VO4 1.11.1.10 GO:0004601 ... A7KH27 35985031
    67 3w36:B (1.97) BS01 VO4 1.11.1.10 GO:0004601 ... A7KH27 35985031
    68 4cit:A (1.8) BS01 VO4 1.11.1.- GO:0004601 ... G0LAH5 25261522
    69 4cit:A (1.8) BS02 VO4 1.11.1.- GO:0004601 ... G0LAH5 25261522
    70 4cit:A (1.8) BS03 VO4 1.11.1.- GO:0004601 ... G0LAH5 25261522
    71 4cit:A (1.8) BS04 VO4 1.11.1.- GO:0004601 ... G0LAH5 25261522
    72 4dz6:B (2.2) BS01 VO4 2.7.4.6 GO:0004550 ... O51419 29870023
    73 4dz6:E (2.2) BS01 VO4 2.7.4.6 GO:0004550 ... O51419 29870023
    74 4dz6:F (2.2) BS01 VO4 2.7.4.6 GO:0004550 ... O51419 29870023
    75 4usz:A (2.0) BS01 VO4 1.11.1.- GO:0004601 ... G0LAH5 25261522
    76 4zi4:A (1.121) BS02 VO4 3.1.3.48 GO:0004725 ... P15273 26445170
    77 4zn5:A (1.12) BS02 VO4 3.1.3.48 GO:0004725 ... P15273 26445170
    78 5aa6:A (2.26) BS01 VO4 1.11.1.18 GO:0004601 ... K7ZUA3 N/A
    79 5aa6:B (2.26) BS01 VO4 1.11.1.18 GO:0004601 ... K7ZUA3 N/A
    80 5aa6:C (2.26) BS01 VO4 1.11.1.18 GO:0004601 ... K7ZUA3 N/A
    81 5aa6:D (2.26) BS01 VO4 1.11.1.18 GO:0004601 ... K7ZUA3 N/A
    82 5aa6:E (2.26) BS01 VO4 1.11.1.18 GO:0004601 ... K7ZUA3 N/A
    83 5aa6:F (2.26) BS01 VO4 1.11.1.18 GO:0004601 ... K7ZUA3 N/A
    84 7bcw:A (3.5) BS01 VO4 7.5.2.6 GO:0005524 ... P60752 34921499
    85 7bcw:A (3.5) BS04 VO4 7.5.2.6 GO:0005524 ... P60752 34921499
    86 7bcw:B (3.5) BS01 VO4 7.5.2.6 GO:0005524 ... P60752 34921499
    87 7bcw:B (3.5) BS03 VO4 7.5.2.6 GO:0005524 ... P60752 34921499
    88 7mpc:A (1.75) BS01 VO4 ? GO:0004725 ... Q97VZ7 34496202
    89 7znu:A (4.0) BS02 VO4 7.5.2.3 GO:0005515 ... Q2YQ73 36456825
    90 7znu:B (4.0) BS03 VO4 7.5.2.3 GO:0005515 ... Q2YQ73 36456825
    91 7zo9:A (3.5) BS02 VO4 7.5.2.3 GO:0005515 ... Q2YQ73 36456825
    92 7zo9:B (3.5) BS02 VO4 7.5.2.3 GO:0005515 ... Q2YQ73 36456825
    93 8pmj:A (2.81) BS05 VO4 7.6.2.- GO:0000139 ... O95342 37949847
    94 9ex0:A (1.45) BS03 VO4 N/A GO:0003796 ... P00698 38842919
    95 9ex2:A (1.172) BS02 VO4 N/A GO:0003796 ... P00698 38842919
    96 9ex2:A (1.172) BS05 VO4 N/A GO:0003796 ... P00698 38842919
    97 9ex2:A (1.172) BS06 VO4 N/A GO:0003796 ... P00698 38842919
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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