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BioLiP
Download all results in tab-seperated text for 42 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1xlr:A (1.94) BS01 VNL 4.1.3.40 GO:0005515 ... P26602 16343413
    2 1xlr:A (1.94) BS02 VNL 4.1.3.40 GO:0005515 ... P26602 16343413
    3 2ahc:A (2.4) BS01 VNL 4.1.3.40 GO:0005515 ... P26602 16343413
    4 2ahc:B (2.4) BS01 VNL 4.1.3.40 GO:0005515 ... P26602 16343413
    5 2ahc:C (2.4) BS01 VNL 4.1.3.40 GO:0005515 ... P26602 16343413
    6 2ahc:D (2.4) BS01 VNL 4.1.3.40 GO:0005515 ... P26602 16343413
    7 2y2x:A (1.65) BS08 VNL ? GO:0015288 ... Q9HUR5 N/A
    8 2y2x:A (1.65) BS09 VNL ? GO:0015288 ... Q9HUR5 N/A
    9 2y2x:B (1.65) BS07 VNL ? GO:0015288 ... Q9HUR5 N/A
    10 2y2x:B (1.65) BS08 VNL ? GO:0015288 ... Q9HUR5 N/A
    11 3sys:A (1.65) BS08 VNL ? GO:0015288 ... Q9HUR5 22272184
    12 3sys:A (1.65) BS09 VNL ? GO:0015288 ... Q9HUR5 22272184
    13 3sys:B (1.65) BS08 VNL ? GO:0015288 ... Q9HUR5 22272184
    14 3sys:B (1.65) BS09 VNL ? GO:0015288 ... Q9HUR5 22272184
    15 4eyg:A (1.86) BS01 VNL ? N/A Q13AR6 22925578
    16 4eyg:B (1.86) BS01 VNL ? N/A Q13AR6 22925578
    17 4l6d:A (1.449) BS02 VNL ? GO:0005737 ... Q8RJ47 N/A
    18 4l6d:A (1.449) BS03 VNL ? GO:0005737 ... Q8RJ47 N/A
    19 4l6d:A (1.449) BS04 VNL ? GO:0005737 ... Q8RJ47 N/A
    20 4l6d:B (1.449) BS02 VNL ? GO:0005737 ... Q8RJ47 N/A
    21 4l6d:B (1.449) BS03 VNL ? GO:0005737 ... Q8RJ47 N/A
    22 4l6d:B (1.449) BS04 VNL ? GO:0005737 ... Q8RJ47 N/A
    23 4l6d:C (1.449) BS02 VNL ? GO:0005737 ... Q8RJ47 N/A
    24 4l6d:C (1.449) BS03 VNL ? GO:0005737 ... Q8RJ47 N/A
    25 4l6d:D (1.449) BS02 VNL ? GO:0005737 ... Q8RJ47 N/A
    26 4l6d:D (1.449) BS03 VNL ? GO:0005737 ... Q8RJ47 N/A
    27 4l6d:E (1.449) BS02 VNL ? GO:0005737 ... Q8RJ47 N/A
    28 4l6d:E (1.449) BS03 VNL ? GO:0005737 ... Q8RJ47 N/A
    29 4l6d:F (1.449) BS02 VNL ? GO:0005737 ... Q8RJ47 N/A
    30 4l6d:F (1.449) BS03 VNL ? GO:0005737 ... Q8RJ47 N/A
    31 4l6d:G (1.449) BS02 VNL ? GO:0005737 ... Q8RJ47 N/A
    32 4l6d:G (1.449) BS03 VNL ? GO:0005737 ... Q8RJ47 N/A
    33 4l6d:G (1.449) BS04 VNL ? GO:0005737 ... Q8RJ47 N/A
    34 4l6d:H (1.449) BS02 VNL ? GO:0005737 ... Q8RJ47 N/A
    35 4l6d:H (1.449) BS03 VNL ? GO:0005737 ... Q8RJ47 N/A
    36 5x1j:A (1.9) BS01 VNL 2.1.1.341 GO:0008168 ... G2IQS7 28429420
    37 5x1j:B (1.9) BS01 VNL 2.1.1.341 GO:0008168 ... G2IQS7 28429420
    38 5x1j:C (1.9) BS01 VNL 2.1.1.341 GO:0008168 ... G2IQS7 28429420
    39 5z7b:A (2.1) BS01 VNL ? N/A Q8NN31 30095229 MOAD: Kd=13uM
    PDBbind: -logKd/Ki=4.89, Kd=13uM
    40 5z7b:B (2.1) BS01 VNL ? N/A Q8NN31 30095229 MOAD: Kd=13uM
    PDBbind: -logKd/Ki=4.89, Kd=13uM
    41 6lg2:A (1.6) BS01 VNL ? N/A Q8NN31 32251291 MOAD: Kd=6.99uM
    42 6lg2:B (1.6) BS01 VNL ? N/A Q8NN31 32251291 MOAD: Kd=6.99uM
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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