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BioLiP
Download all results in tab-seperated text for 11 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 4pyx:A (1.8) BS02 V90 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 25358084 MOAD: Kd=730nM
    PDBbind: -logKd/Ki=6.14, Kd=730nM
    BindingDB: Kd=730nM
    2 4q06:A (1.15) BS02 V90 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 25358084 MOAD: Kd=22nM
    PDBbind: -logKd/Ki=7.66, Kd=22nM
    BindingDB: Kd=730nM
    3 4q08:A (1.07) BS02 V90 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 25358084 MOAD: Kd=500nM
    PDBbind: -logKd/Ki=6.30, Kd=500nM
    BindingDB: Kd=730nM
    4 5ogj:A (1.06) BS02 V90 4.2.1.1 GO:0004089 ... Q8N1Q1 N/A BindingDB: Kd=130nM
    5 5ogj:B (1.06) BS02 V90 4.2.1.1 GO:0004089 ... Q8N1Q1 N/A BindingDB: Kd=130nM
    6 6fe0:A (1.91) BS02 V90 4.2.1.1 GO:0004089 ... Q16790 29928486 MOAD: Kd=1.1nM
    PDBbind: -logKd/Ki=6.48, Kd=330nM
    BindingDB: Kd=15nM
    7 6fe0:B (1.91) BS02 V90 4.2.1.1 GO:0004089 ... Q16790 29928486 MOAD: Kd=1.1nM
    BindingDB: Kd=15nM
    8 6fe0:C (1.91) BS02 V90 4.2.1.1 GO:0004089 ... Q16790 29928486 MOAD: Kd=1.1nM
    BindingDB: Kd=15nM
    9 6fe0:D (1.91) BS02 V90 4.2.1.1 GO:0004089 ... Q16790 29928486 MOAD: Kd=1.1nM
    BindingDB: Kd=15nM
    10 6rof:A (1.5) BS02 V90 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 N/A BindingDB: Kd=730nM
    11 7nzr:A (1.284) BS02 V90 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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