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BioLiP
Download all results in tab-seperated text for 97 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1prc:L (2.3) BS04 UQ1 ? GO:0009772 ... P06009 7877166
    2 1zoy:C (2.4) BS01 UQ1 ? GO:0006099 ... D0VWV4 15989954
    3 2hi7:B (3.7) BS01 UQ1 1.8.5.- GO:0005515 ... P0A6M2 17110337
    4 2i5n:L (1.96) BS06 UQ1 ? GO:0009772 ... P06009 17159147
    5 2i5n:M (1.96) BS05 UQ1 ? GO:0009772 ... P06010 17159147
    6 2leg:B (-1.00) BS01 UQ1 ? GO:0005515 ... P0A6M2 21938394
    7 2vpx:C (3.1) BS01 UQ1 ? GO:0016020 ... Q72LA6 18536726
    8 2vpx:G (3.1) BS01 UQ1 ? GO:0016020 ... Q72LA6 18536726
    9 2ybb:C (19.0) BS04 UQ1 1.10.2.2 GO:0005739 ... P00157 21909073
    10 2ybb:c (19.0) BS04 UQ1 1.10.2.2 GO:0005739 ... P00157 21909073
    11 2zup:B (3.7) BS01 UQ1 1.8.5.- GO:0005515 ... P0A6M2 19214188
    12 2zuq:A (3.3) BS01 UQ1 1.8.5.- GO:0005515 ... P0A6M2 19214188
    13 2zuq:D (3.3) BS01 UQ1 1.8.5.- GO:0005515 ... P0A6M2 19214188
    14 3d38:L (3.21) BS04 UQ1 ? GO:0009772 ... P06009 18831551
    15 3d38:M (3.21) BS03 UQ1 ? GO:0009772 ... P06010 18831551
    16 3e9j:C (3.7) BS01 UQ1 1.8.5.- GO:0005515 ... P0A6M2 18775700
    17 3e9j:F (3.7) BS01 UQ1 1.8.5.- GO:0005515 ... P0A6M2 18775700
    18 3g7f:L (2.5) BS04 UQ1 ? GO:0009772 ... P06009 19539602
    19 3g7f:M (2.5) BS05 UQ1 ? GO:0009772 ... P06010 19539602
    20 3i4d:L (2.01) BS05 UQ1 ? GO:0009772 ... P0C0Y8 N/A
    21 3i4d:M (2.01) BS04 UQ1 ? GO:0009772 ... P0C0Y9 N/A
    22 4n9q:A (2.0) BS02 UQ1 1.6.5.-
    1.7.1.17    		 GO:0003960 ... Q9I5F3 24915188
    23 4tqq:L (2.499) BS04 UQ1 ? GO:0009772 ... P0C0Y8 25285049
    24 5c3j:C (2.8) BS02 UQ1 ? GO:0005515 ... P92506 N/A
    25 5c3j:G (2.8) BS02 UQ1 ? GO:0005515 ... P92506 N/A
    26 5c3j:H (2.8) BS02 UQ1 ? GO:0005515 ... P92507 N/A
    27 6oi6:A (2.56) BS02 UQ1 1.8.5.8 GO:0005515 ... Q9Y6N5 31591036
    28 6oi6:A (2.56) BS03 UQ1 1.8.5.8 GO:0005515 ... Q9Y6N5 31591036
    29 6oib:A (2.03) BS02 UQ1 1.8.5.8 GO:0005515 ... Q9Y6N5 31591036
    30 6oib:A (2.03) BS03 UQ1 1.8.5.8 GO:0005515 ... Q9Y6N5 31591036
    31 6oib:B (2.03) BS01 UQ1 1.8.5.8 GO:0005515 ... Q9Y6N5 31591036
    32 6oic:A (2.21) BS02 UQ1 1.8.5.8 GO:0005515 ... Q9Y6N5 31591036
    33 6oic:A (2.21) BS03 UQ1 1.8.5.8 GO:0005515 ... Q9Y6N5 31591036
    34 6oic:A (2.21) BS04 UQ1 1.8.5.8 GO:0005515 ... Q9Y6N5 31591036
    35 6oic:B (2.21) BS02 UQ1 1.8.5.8 GO:0005515 ... Q9Y6N5 31591036
    36 6wh6:A (2.25) BS02 UQ1 1.8.5.8 GO:0005515 ... Q9Y6N5 32787249
    37 6wh6:A (2.25) BS03 UQ1 1.8.5.8 GO:0005515 ... Q9Y6N5 32787249
    38 6wh6:B (2.25) BS02 UQ1 1.8.5.8 GO:0005515 ... Q9Y6N5 32787249
    39 6wvf:A (2.9) BS01 UQ1 ? GO:0005515 ... P0A6M2
    P42212    		 33355146
    40 7d6v:C (2.53) BS01 UQ1 ? GO:0016020 ... A0QPJ4 33876763
    41 7pil:L (2.5) BS03 UQ1 ? GO:0009772 ... Q3J1A5 34590677
    42 7pqd:L (2.9) BS03 UQ1 N/A GO:0009772 ... N/A 34622934
    43 7pqd:l (2.9) BS06 UQ1 N/A GO:0009772 ... N/A 34622934
    44 7q7p:LLL (2.4) BS04 UQ1 ? GO:0009772 ... P06009 35647917
    45 7q7p:LLL (2.4) BS05 UQ1 ? GO:0009772 ... P06009 35647917
    46 7q7p:MMM (2.4) BS03 UQ1 ? GO:0009772 ... P06010 35647917
    47 7v2r:C (2.6) BS04 UQ1 ? GO:0008137 ... A0A8D1TL60 35145322
    48 7v2r:Q (2.6) BS02 UQ1 ? GO:0003954 ... F1S1A8 35145322
    49 7vyn:C (2.4) BS03 UQ1 ? GO:0008137 ... A0A8D1TL60 35145322
    50 7vyn:Q (2.4) BS03 UQ1 ? GO:0016651 ... F1S1A8 35145322
    51 7vyn:Q (2.4) BS04 UQ1 ? GO:0016651 ... F1S1A8 35145322
    52 7w4c:C (2.7) BS03 UQ1 ? GO:0008137 ... A0A8D1TL60 35145322
    53 7w4c:Q (2.7) BS02 UQ1 ? GO:0003954 ... F1S1A8 35145322
    54 7w4c:Q (2.7) BS03 UQ1 ? GO:0003954 ... F1S1A8 35145322
    55 7w4d:C (3.0) BS03 UQ1 ? GO:0008137 ... A0A8D1TL60 35145322
    56 7w4d:Q (3.0) BS02 UQ1 ? GO:0003954 ... F1S1A8 35145322
    57 7w4e:C (3.0) BS04 UQ1 ? GO:0008137 ... A0A8D1TL60 35145322
    58 7w4e:Q (3.0) BS02 UQ1 ? GO:0003954 ... F1S1A8 35145322
    59 7w4f:C (2.7) BS03 UQ1 ? GO:0008137 ... A0A8D1TL60 35145322
    60 7w4f:Q (2.7) BS02 UQ1 ? GO:0003954 ... F1S1A8 35145322
    61 7w4g:C (3.1) BS03 UQ1 ? GO:0008137 ... A0A8D1TL60 35145322
    62 7w4g:Q (3.1) BS02 UQ1 ? GO:0003954 ... F1S1A8 35145322
    63 7ytl:A (2.62) BS02 UQ1 ? GO:0000166 ... E1BR24 37739943
    64 8a1w:B (2.56) BS03 UQ1 7.2.1.1 GO:0005886 ... A5F5X0 37710014
    65 8bgw:A (2.2) BS06 UQ1 N/A GO:0004129 ... N/A 37296134
    66 8bgw:B (2.2) BS10 UQ1 N/A GO:0004129 ... N/A 37296134
    67 8evu:B (2.5804) BS03 UQ1 7.2.1.1 GO:0005886 ... A5F5X0 N/A
    68 8ew3:B (2.65159) BS03 UQ1 7.2.1.1 GO:0005886 ... A5F5X0 N/A
    69 8gs8:B (2.86) BS04 UQ1 1.3.5.1 GO:0005515 ... P21912 37098072
    70 8gs8:C (2.86) BS01 UQ1 ? GO:0005515 ... Q99643 37098072
    71 8i07:A (1.99) BS05 UQ1 4.1.1.47 GO:0000287 ... P0AEP7 37890751
    72 8i07:A (1.99) BS06 UQ1 4.1.1.47 GO:0000287 ... P0AEP7 37890751
    73 8i07:B (1.99) BS05 UQ1 4.1.1.47 GO:0000287 ... P0AEP7 37890751
    74 8i07:B (1.99) BS06 UQ1 4.1.1.47 GO:0000287 ... P0AEP7 37890751
    75 8i07:C (1.99) BS05 UQ1 4.1.1.47 GO:0000287 ... P0AEP7 37890751
    76 8i07:C (1.99) BS06 UQ1 4.1.1.47 GO:0000287 ... P0AEP7 37890751
    77 8i07:D (1.99) BS05 UQ1 4.1.1.47 GO:0000287 ... P0AEP7 37890751
    78 8i07:D (1.99) BS06 UQ1 4.1.1.47 GO:0000287 ... P0AEP7 37890751
    79 8i07:E (1.99) BS06 UQ1 4.1.1.47 GO:0000287 ... P0AEP7 37890751
    80 8i07:F (1.99) BS06 UQ1 4.1.1.47 GO:0000287 ... P0AEP7 37890751
    81 8i07:F (1.99) BS07 UQ1 4.1.1.47 GO:0000287 ... P0AEP7 37890751
    82 8iao:B (4.2) BS02 UQ1 N/A N/A Q9DC70 N/A
    83 8iao:D (4.2) BS02 UQ1 N/A N/A Q91WD5 N/A
    84 8iap:B (3.2) BS02 UQ1 N/A N/A Q9DC70 N/A
    85 8iap:D (3.2) BS02 UQ1 N/A N/A Q91WD5 N/A
    86 8ib4:B (4.3) BS02 UQ1 N/A N/A Q9DC70 N/A
    87 8ib4:D (4.3) BS02 UQ1 N/A N/A Q91WD5 N/A
    88 8ib5:B (3.3) BS02 UQ1 N/A N/A Q9DC70 N/A
    89 8ib5:D (3.3) BS02 UQ1 N/A N/A Q91WD5 N/A
    90 8ib9:B (4.3) BS02 UQ1 N/A N/A Q9DC70 N/A
    91 8ib9:D (4.3) BS02 UQ1 N/A N/A Q91WD5 N/A
    92 8iba:B (3.2) BS02 UQ1 N/A N/A Q9DC70 N/A
    93 8iba:D (3.2) BS02 UQ1 N/A N/A Q91WD5 N/A
    94 8ibd:B (4.2) BS02 UQ1 N/A N/A Q9DC70 N/A
    95 8ibe:B (3.3) BS02 UQ1 N/A N/A Q9DC70 N/A
    96 8ic2:B (6.3) BS02 UQ1 N/A N/A Q9DC70 N/A
    97 8ic3:B (3.2) BS02 UQ1 N/A N/A Q9DC70 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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