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BioLiP
Download all results in tab-seperated text for 86 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1dvj:A (1.5) BS01 UP6 4.1.1.23 GO:0004590 ... O26232 10681441 MOAD: Ki=0.51mM
    BindingDB: Ki=12400nM
    2 1dvj:B (1.5) BS01 UP6 4.1.1.23 GO:0004590 ... O26232 10681441 MOAD: Ki=0.51mM
    BindingDB: Ki=12400nM
    3 1dvj:C (1.5) BS01 UP6 4.1.1.23 GO:0004590 ... O26232 10681441 MOAD: Ki=0.51mM
    BindingDB: Ki=12400nM
    4 1dvj:D (1.5) BS01 UP6 4.1.1.23 GO:0004590 ... O26232 10681441 MOAD: Ki=0.51mM
    BindingDB: Ki=12400nM
    5 1kly:A (1.5) BS01 UP6 4.1.1.23 GO:0004590 ... O26232 11900543 BindingDB: Ki=12400nM
    6 1km0:A (1.7) BS01 UP6 4.1.1.23 GO:0004590 ... O26232 11900543 BindingDB: Ki=12400nM
    7 1km0:A (1.7) BS02 UP6 4.1.1.23 GO:0004590 ... O26232 11900543 BindingDB: Ki=12400nM
    8 1km0:B (1.7) BS01 UP6 4.1.1.23 GO:0004590 ... O26232 11900543 BindingDB: Ki=12400nM
    9 1km0:B (1.7) BS02 UP6 4.1.1.23 GO:0004590 ... O26232 11900543 BindingDB: Ki=12400nM
    10 1km0:C (1.7) BS01 UP6 4.1.1.23 GO:0004590 ... O26232 11900543 BindingDB: Ki=12400nM
    11 1km0:C (1.7) BS02 UP6 4.1.1.23 GO:0004590 ... O26232 11900543 BindingDB: Ki=12400nM
    12 1km0:D (1.7) BS01 UP6 4.1.1.23 GO:0004590 ... O26232 11900543 BindingDB: Ki=12400nM
    13 1km0:D (1.7) BS02 UP6 4.1.1.23 GO:0004590 ... O26232 11900543 BindingDB: Ki=12400nM
    14 1km1:A (1.6) BS01 UP6 4.1.1.23 GO:0004590 ... O26232 11900543 BindingDB: Ki=12400nM
    15 1km1:A (1.6) BS02 UP6 4.1.1.23 GO:0004590 ... O26232 11900543 BindingDB: Ki=12400nM
    16 1km1:B (1.6) BS01 UP6 4.1.1.23 GO:0004590 ... O26232 11900543 BindingDB: Ki=12400nM
    17 1km1:B (1.6) BS02 UP6 4.1.1.23 GO:0004590 ... O26232 11900543 BindingDB: Ki=12400nM
    18 1km2:A (1.5) BS01 UP6 4.1.1.23 GO:0004590 ... O26232 11900543 BindingDB: Ki=12400nM
    19 1km3:A (1.5) BS01 UP6 4.1.1.23 GO:0004590 ... O26232 11900543 PDBbind: -logKd/Ki=4.91, Ki=12.4uM
    BindingDB: Ki=12400nM
    20 1km5:A (1.5) BS01 UP6 4.1.1.23 GO:0004590 ... O26232 11900543 BindingDB: Ki=12400nM
    21 1los:A (1.9) BS01 UP6 4.1.1.23 GO:0004590 ... O26232 12011084 MOAD: Ki=64nM
    BindingDB: Ki=12400nM
    22 1los:A (1.9) BS02 UP6 4.1.1.23 GO:0004590 ... O26232 12011084 MOAD: Ki=64nM
    BindingDB: Ki=12400nM
    23 1los:B (1.9) BS01 UP6 4.1.1.23 GO:0004590 ... O26232 12011084 MOAD: Ki=64nM
    BindingDB: Ki=12400nM
    24 1los:B (1.9) BS02 UP6 4.1.1.23 GO:0004590 ... O26232 12011084 MOAD: Ki=64nM
    BindingDB: Ki=12400nM
    25 1los:C (1.9) BS01 UP6 4.1.1.23 GO:0004590 ... O26232 12011084 MOAD: Ki=64nM
    BindingDB: Ki=12400nM
    26 1los:C (1.9) BS02 UP6 4.1.1.23 GO:0004590 ... O26232 12011084 MOAD: Ki=64nM
    BindingDB: Ki=12400nM
    27 1los:D (1.9) BS01 UP6 4.1.1.23 GO:0004590 ... O26232 12011084 MOAD: Ki=64nM
    BindingDB: Ki=12400nM
    28 1los:D (1.9) BS02 UP6 4.1.1.23 GO:0004590 ... O26232 12011084 MOAD: Ki=64nM
    BindingDB: Ki=12400nM
    29 2guu:A (1.86) BS01 UP6 N/A GO:0004590 ... N/A N/A
    30 3g1a:A (1.5) BS01 UP6 4.1.1.23 GO:0004590 ... O26232 19435314 BindingDB: Ki=12400nM
    31 3g1a:A (1.5) BS02 UP6 4.1.1.23 GO:0004590 ... O26232 19435314 BindingDB: Ki=12400nM
    32 3g1a:B (1.5) BS01 UP6 4.1.1.23 GO:0004590 ... O26232 19435314 BindingDB: Ki=12400nM
    33 3g1a:B (1.5) BS02 UP6 4.1.1.23 GO:0004590 ... O26232 19435314 BindingDB: Ki=12400nM
    34 3g24:A (1.5) BS01 UP6 4.1.1.23 GO:0004590 ... O26232 19435314 BindingDB: Ki=12400nM
    35 3g24:A (1.5) BS02 UP6 4.1.1.23 GO:0004590 ... O26232 19435314 BindingDB: Ki=12400nM
    36 3g24:B (1.5) BS01 UP6 4.1.1.23 GO:0004590 ... O26232 19435314 BindingDB: Ki=12400nM
    37 3g24:B (1.5) BS02 UP6 4.1.1.23 GO:0004590 ... O26232 19435314 BindingDB: Ki=12400nM
    38 3gdl:A (1.65) BS01 UP6 4.1.1.23 GO:0004590 ... P03962 19435314 BindingDB: Ki=64nM
    39 3gdl:A (1.65) BS02 UP6 4.1.1.23 GO:0004590 ... P03962 19435314 BindingDB: Ki=64nM
    40 3gdl:B (1.65) BS01 UP6 4.1.1.23 GO:0004590 ... P03962 19435314 BindingDB: Ki=64nM
    41 3gdl:B (1.65) BS02 UP6 4.1.1.23 GO:0004590 ... P03962 19435314 BindingDB: Ki=64nM
    42 3gdt:A (1.6) BS01 UP6 4.1.1.23 GO:0004590 ... P03962 19435314 PDBbind: -logKd/Ki=7.19, Ki=64nM
    BindingDB: Ki=64nM
    43 3gdt:B (1.6) BS01 UP6 4.1.1.23 GO:0004590 ... P03962 19435314 BindingDB: Ki=64nM
    44 3gdt:C (1.6) BS01 UP6 4.1.1.23 GO:0004590 ... P03962 19435314 BindingDB: Ki=64nM
    45 3gdt:D (1.6) BS01 UP6 4.1.1.23 GO:0004590 ... P03962 19435314 PDBbind: -logKd/Ki=7.19, Ki=64nM
    BindingDB: Ki=64nM
    46 3lld:A (1.45) BS01 UP6 4.1.1.23 GO:0004590 ... O26232 20369850 BindingDB: Ki=12400nM
    47 3lld:A (1.45) BS02 UP6 4.1.1.23 GO:0004590 ... O26232 20369850 BindingDB: Ki=12400nM
    48 3lld:B (1.45) BS01 UP6 4.1.1.23 GO:0004590 ... O26232 20369850 BindingDB: Ki=12400nM
    49 3lld:B (1.45) BS02 UP6 4.1.1.23 GO:0004590 ... O26232 20369850 BindingDB: Ki=12400nM
    50 3llf:A (1.3) BS01 UP6 4.1.1.23 GO:0004590 ... O26232 20369850 BindingDB: Ki=12400nM
    51 3llf:A (1.3) BS02 UP6 4.1.1.23 GO:0004590 ... O26232 20369850 BindingDB: Ki=12400nM
    52 3llf:B (1.3) BS01 UP6 4.1.1.23 GO:0004590 ... O26232 20369850 BindingDB: Ki=12400nM
    53 3llf:B (1.3) BS02 UP6 4.1.1.23 GO:0004590 ... O26232 20369850 BindingDB: Ki=12400nM
    54 3nq6:A (1.494) BS01 UP6 4.1.1.23 GO:0004590 ... O26232 N/A BindingDB: Ki=12400nM
    55 3nq6:A (1.494) BS02 UP6 4.1.1.23 GO:0004590 ... O26232 N/A BindingDB: Ki=12400nM
    56 3nq6:B (1.494) BS01 UP6 4.1.1.23 GO:0004590 ... O26232 N/A BindingDB: Ki=12400nM
    57 3nq6:B (1.494) BS02 UP6 4.1.1.23 GO:0004590 ... O26232 N/A BindingDB: Ki=12400nM
    58 3pbu:A (1.299) BS01 UP6 4.1.1.23 GO:0004590 ... O26232 21870810 BindingDB: Ki=12400nM
    59 3pbu:A (1.299) BS02 UP6 4.1.1.23 GO:0004590 ... O26232 21870810 BindingDB: Ki=12400nM
    60 3pbu:B (1.299) BS01 UP6 4.1.1.23 GO:0004590 ... O26232 21870810 BindingDB: Ki=12400nM
    61 3pbu:B (1.299) BS02 UP6 4.1.1.23 GO:0004590 ... O26232 21870810 BindingDB: Ki=12400nM
    62 3pbv:A (1.3) BS01 UP6 4.1.1.23 GO:0004590 ... O26232 21870810 BindingDB: Ki=12400nM
    63 3pbv:A (1.3) BS02 UP6 4.1.1.23 GO:0004590 ... O26232 21870810 BindingDB: Ki=12400nM
    64 3pbv:B (1.3) BS01 UP6 4.1.1.23 GO:0004590 ... O26232 21870810 BindingDB: Ki=12400nM
    65 3pbv:B (1.3) BS02 UP6 4.1.1.23 GO:0004590 ... O26232 21870810 BindingDB: Ki=12400nM
    66 3pbw:A (1.3) BS01 UP6 4.1.1.23 GO:0004590 ... O26232 21870810 BindingDB: Ki=12400nM
    67 3pbw:A (1.3) BS02 UP6 4.1.1.23 GO:0004590 ... O26232 21870810 BindingDB: Ki=12400nM
    68 3pbw:B (1.3) BS01 UP6 4.1.1.23 GO:0004590 ... O26232 21870810 BindingDB: Ki=12400nM
    69 3pbw:B (1.3) BS02 UP6 4.1.1.23 GO:0004590 ... O26232 21870810 BindingDB: Ki=12400nM
    70 3pby:A (1.3) BS01 UP6 4.1.1.23 GO:0004590 ... O26232 21870810 BindingDB: Ki=12400nM
    71 3pby:A (1.3) BS02 UP6 4.1.1.23 GO:0004590 ... O26232 21870810 BindingDB: Ki=12400nM
    72 3pby:B (1.3) BS01 UP6 4.1.1.23 GO:0004590 ... O26232 21870810 BindingDB: Ki=12400nM
    73 3pby:B (1.3) BS02 UP6 4.1.1.23 GO:0004590 ... O26232 21870810 BindingDB: Ki=12400nM
    74 3pc0:A (1.298) BS01 UP6 4.1.1.23 GO:0004590 ... O26232 21870810 BindingDB: Ki=12400nM
    75 3pc0:A (1.298) BS02 UP6 4.1.1.23 GO:0004590 ... O26232 21870810 BindingDB: Ki=12400nM
    76 3pc0:B (1.298) BS01 UP6 4.1.1.23 GO:0004590 ... O26232 21870810 BindingDB: Ki=12400nM
    77 3pc0:B (1.298) BS02 UP6 4.1.1.23 GO:0004590 ... O26232 21870810 BindingDB: Ki=12400nM
    78 3sy5:A (1.321) BS01 UP6 4.1.1.23 GO:0004590 ... O26232 N/A BindingDB: Ki=12400nM
    79 3sy5:A (1.321) BS02 UP6 4.1.1.23 GO:0004590 ... O26232 N/A BindingDB: Ki=12400nM
    80 3sy5:B (1.321) BS01 UP6 4.1.1.23 GO:0004590 ... O26232 N/A BindingDB: Ki=12400nM
    81 3sy5:B (1.321) BS02 UP6 4.1.1.23 GO:0004590 ... O26232 N/A BindingDB: Ki=12400nM
    82 4nx5:A (1.591) BS01 UP6 4.1.1.23 GO:0004590 ... O26232 N/A BindingDB: Ki=12400nM
    83 4nx5:A (1.591) BS02 UP6 4.1.1.23 GO:0004590 ... O26232 N/A BindingDB: Ki=12400nM
    84 4nx5:B (1.591) BS01 UP6 4.1.1.23 GO:0004590 ... O26232 N/A BindingDB: Ki=12400nM
    85 4nx5:B (1.591) BS02 UP6 4.1.1.23 GO:0004590 ... O26232 N/A BindingDB: Ki=12400nM
    86 6zx1:A (1.0) BS01 UP6 2.4.2.10
    4.1.1.23    		 GO:0004590 ... P11172 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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