Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
Download all results in tab-seperated text for 27 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
  • Sort results by
    << < 1 > >>
    Go to page

    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 4zul:A (1.76) BS01 UN1 1.2.1.3
    1.2.1.31
    1.2.1.8
    GO:0004029 ... P49419 26260980
    2 4zul:B (1.76) BS01 UN1 1.2.1.3
    1.2.1.31
    1.2.1.8
    GO:0004029 ... P49419 26260980
    3 4zul:C (1.76) BS01 UN1 1.2.1.3
    1.2.1.31
    1.2.1.8
    GO:0004029 ... P49419 26260980
    4 4zul:D (1.76) BS01 UN1 1.2.1.3
    1.2.1.31
    1.2.1.8
    GO:0004029 ... P49419 26260980
    5 4zul:E (1.76) BS01 UN1 1.2.1.3
    1.2.1.31
    1.2.1.8
    GO:0004029 ... P49419 26260980
    6 4zul:F (1.76) BS01 UN1 1.2.1.3
    1.2.1.31
    1.2.1.8
    GO:0004029 ... P49419 26260980
    7 4zul:G (1.76) BS01 UN1 1.2.1.3
    1.2.1.31
    1.2.1.8
    GO:0004029 ... P49419 26260980
    8 4zul:H (1.76) BS01 UN1 1.2.1.3
    1.2.1.31
    1.2.1.8
    GO:0004029 ... P49419 26260980
    9 5k2m:I (2.18) BS03 UN1 ? GO:0003824 ... Q5JFW0 27566549
    10 6hnv:B (2.6) BS02 UN1 ? GO:0000949 ... A0A1D8PMC5 30742897
    11 6o4f:B (1.9) BS01 UN1 1.2.1.3
    1.2.1.31
    1.2.1.8
    GO:0004029 ... P49419 31302938
    12 6o4f:E (1.9) BS01 UN1 1.2.1.3
    1.2.1.31
    1.2.1.8
    GO:0004029 ... P49419 31302938
    13 6o4f:F (1.9) BS01 UN1 1.2.1.3
    1.2.1.31
    1.2.1.8
    GO:0004029 ... P49419 31302938
    14 6o4g:B (2.05) BS01 UN1 1.2.1.3
    1.2.1.31
    1.2.1.8
    GO:0004029 ... P49419 31302938
    15 6o4g:E (2.05) BS01 UN1 1.2.1.3
    1.2.1.31
    1.2.1.8
    GO:0004029 ... P49419 31302938
    16 6o4g:G (2.05) BS01 UN1 1.2.1.3
    1.2.1.31
    1.2.1.8
    GO:0004029 ... P49419 31302938
    17 6o4g:H (2.05) BS01 UN1 1.2.1.3
    1.2.1.31
    1.2.1.8
    GO:0004029 ... P49419 31302938
    18 6o4i:A (1.75) BS01 UN1 1.2.1.3
    1.2.1.31
    1.2.1.8
    GO:0004029 ... P49419 31652343
    19 6o4i:B (1.75) BS01 UN1 1.2.1.3
    1.2.1.31
    1.2.1.8
    GO:0004029 ... P49419 31652343
    20 6o4i:C (1.75) BS01 UN1 1.2.1.3
    1.2.1.31
    1.2.1.8
    GO:0004029 ... P49419 31652343
    21 6o4i:D (1.75) BS01 UN1 1.2.1.3
    1.2.1.31
    1.2.1.8
    GO:0004029 ... P49419 31652343
    22 6o4i:E (1.75) BS01 UN1 1.2.1.3
    1.2.1.31
    1.2.1.8
    GO:0004029 ... P49419 31652343
    23 6o4i:F (1.75) BS01 UN1 1.2.1.3
    1.2.1.31
    1.2.1.8
    GO:0004029 ... P49419 31652343
    24 6o4i:G (1.75) BS01 UN1 1.2.1.3
    1.2.1.31
    1.2.1.8
    GO:0004029 ... P49419 31652343
    25 6o4i:H (1.75) BS01 UN1 1.2.1.3
    1.2.1.31
    1.2.1.8
    GO:0004029 ... P49419 31652343
    26 6rtu:A (1.9) BS01 UN1 1.2.1.3 GO:0000166 ... O85725 31793904
    27 7p3l:A (1.32) BS02 UN1 1.21.3.1 GO:0005506 ... P05326 N/A

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218