Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 963 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 1 2 3 4 5 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    801 6lhj:B (2.4) BS01 UMP 1.5.1.3
    2.1.1.45    		 GO:0000166 ... D9N170 32294614
    802 6lhj:B (2.4) BS04 UMP 1.5.1.3
    2.1.1.45    		 GO:0000166 ... D9N170 32294614
    803 6lis:A (1.998) BS01 UMP 3.6.1.23 GO:0004170 ... Q65199 33139328
    804 6lis:B (1.998) BS01 UMP 3.6.1.23 GO:0004170 ... Q65199 33139328
    805 6lis:C (1.998) BS01 UMP 3.6.1.23 GO:0004170 ... Q65199 33139328
    806 6lis:C (1.998) BS02 UMP 3.6.1.23 GO:0004170 ... Q65199 33139328
    807 6lis:D (1.998) BS01 UMP 3.6.1.23 GO:0004170 ... Q65199 33139328
    808 6lis:D (1.998) BS02 UMP 3.6.1.23 GO:0004170 ... Q65199 33139328
    809 6lis:E (1.998) BS01 UMP 3.6.1.23 GO:0004170 ... Q65199 33139328
    810 6lis:F (1.998) BS01 UMP 3.6.1.23 GO:0004170 ... Q65199 33139328
    811 6lis:F (1.998) BS02 UMP 3.6.1.23 GO:0004170 ... Q65199 33139328
    812 6mao:A (1.95) BS01 UMP 3.6.1.23 GO:0000287 ... Q5ZSN0 N/A
    813 6n1s:A (3.0) BS01 UMP 1.5.1.3
    2.1.1.45    		 GO:0004146 ... Q07422 30624926
    814 6n1s:A (3.0) BS04 UMP 1.5.1.3
    2.1.1.45    		 GO:0004146 ... Q07422 30624926
    815 6n1s:B (3.0) BS01 UMP 1.5.1.3
    2.1.1.45    		 GO:0004146 ... Q07422 30624926
    816 6n1s:B (3.0) BS02 UMP 1.5.1.3
    2.1.1.45    		 GO:0004146 ... Q07422 30624926
    817 6n1t:A (3.5) BS01 UMP 1.5.1.3
    2.1.1.45    		 GO:0004146 ... Q07422 30624926
    818 6n1t:A (3.5) BS04 UMP 1.5.1.3
    2.1.1.45    		 GO:0004146 ... Q07422 30624926
    819 6n1t:B (3.5) BS01 UMP 1.5.1.3
    2.1.1.45    		 GO:0004146 ... Q07422 30624926
    820 6n1t:B (3.5) BS02 UMP 1.5.1.3
    2.1.1.45    		 GO:0004146 ... Q07422 30624926
    821 6oju:A (2.884) BS01 UMP 2.1.1.45 GO:0000900 ... P04818 31172516
    822 6oju:B (2.884) BS01 UMP 2.1.1.45 GO:0000900 ... P04818 31172516
    823 6oju:C (2.884) BS01 UMP 2.1.1.45 GO:0000900 ... P04818 31172516
    824 6oju:D (2.884) BS01 UMP 2.1.1.45 GO:0000900 ... P04818 31172516
    825 6ojv:A (2.593) BS01 UMP 2.1.1.45 GO:0000900 ... P04818 31172516
    826 6ojv:A (2.593) BS03 UMP 2.1.1.45 GO:0000900 ... P04818 31172516
    827 6ojv:B (2.593) BS01 UMP 2.1.1.45 GO:0000900 ... P04818 31172516
    828 6ojv:C (2.593) BS01 UMP 2.1.1.45 GO:0000900 ... P04818 31172516
    829 6ojv:D (2.593) BS01 UMP 2.1.1.45 GO:0000900 ... P04818 31172516
    830 6ojv:D (2.593) BS02 UMP 2.1.1.45 GO:0000900 ... P04818 31172516
    831 6pf3:A (2.391) BS01 UMP 2.1.1.45 GO:0000900 ... P04818 31536894
    832 6pf3:B (2.391) BS01 UMP 2.1.1.45 GO:0000900 ... P04818 31536894
    833 6pf3:C (2.391) BS01 UMP 2.1.1.45 GO:0000900 ... P04818 31536894
    834 6pf3:D (2.391) BS01 UMP 2.1.1.45 GO:0000900 ... P04818 31536894
    835 6pf4:A (2.854) BS01 UMP 2.1.1.45 GO:0000900 ... P04818 31536894
    836 6pf4:B (2.854) BS01 UMP 2.1.1.45 GO:0000900 ... P04818 31536894
    837 6pf4:B (2.854) BS03 UMP 2.1.1.45 GO:0000900 ... P04818 31536894
    838 6pf4:C (2.854) BS01 UMP 2.1.1.45 GO:0000900 ... P04818 31536894
    839 6pf4:D (2.854) BS01 UMP 2.1.1.45 GO:0000900 ... P04818 31536894
    840 6pf4:D (2.854) BS02 UMP 2.1.1.45 GO:0000900 ... P04818 31536894
    841 6pf5:A (2.39) BS01 UMP 2.1.1.45 GO:0000900 ... P04818 31536894
    842 6pf5:B (2.39) BS01 UMP 2.1.1.45 GO:0000900 ... P04818 31536894
    843 6pf5:C (2.39) BS01 UMP 2.1.1.45 GO:0000900 ... P04818 31536894
    844 6pf5:D (2.39) BS01 UMP 2.1.1.45 GO:0000900 ... P04818 31536894
    845 6pf6:A (2.502) BS01 UMP 2.1.1.45 GO:0000900 ... P04818 31536894
    846 6pf6:A (2.502) BS02 UMP 2.1.1.45 GO:0000900 ... P04818 31536894
    847 6pf6:B (2.502) BS01 UMP 2.1.1.45 GO:0000900 ... P04818 31536894
    848 6pf6:B (2.502) BS03 UMP 2.1.1.45 GO:0000900 ... P04818 31536894
    849 6pf6:C (2.502) BS01 UMP 2.1.1.45 GO:0000900 ... P04818 31536894
    850 6pf6:D (2.502) BS01 UMP 2.1.1.45 GO:0000900 ... P04818 31536894
    851 6qxh:A (2.04) BS01 UMP 2.1.1.45 GO:0000900 ... P04818 30935102
    852 6qxh:A (2.04) BS02 UMP 2.1.1.45 GO:0000900 ... P04818 30935102
    853 6qxh:B (2.04) BS01 UMP 2.1.1.45 GO:0000900 ... P04818 30935102
    854 6qxh:B (2.04) BS02 UMP 2.1.1.45 GO:0000900 ... P04818 30935102
    855 6qxh:C (2.04) BS01 UMP 2.1.1.45 GO:0000900 ... P04818 30935102
    856 6qya:A (1.76) BS01 UMP 2.1.1.45 GO:0004799 ... Q834R3 30935102
    857 6qya:B (1.76) BS01 UMP 2.1.1.45 GO:0004799 ... Q834R3 30935102
    858 6qya:C (1.76) BS01 UMP 2.1.1.45 GO:0004799 ... Q834R3 30935102
    859 6qya:D (1.76) BS01 UMP 2.1.1.45 GO:0004799 ... Q834R3 30935102
    860 6y08:A (2.297) BS01 UMP 2.1.1.45 GO:0000900 ... P07607 N/A
    861 6y08:A (2.297) BS03 UMP 2.1.1.45 GO:0000900 ... P07607 N/A
    862 6y08:B (2.297) BS01 UMP 2.1.1.45 GO:0000900 ... P07607 N/A
    863 6y08:B (2.297) BS02 UMP 2.1.1.45 GO:0000900 ... P07607 N/A
    864 7cca:A (2.75) BS01 UMP 2.1.1.45 GO:0004799 ... Q77J90 33197475
    865 7cca:A (2.75) BS03 UMP 2.1.1.45 GO:0004799 ... Q77J90 33197475
    866 7cca:B (2.75) BS01 UMP 2.1.1.45 GO:0004799 ... Q77J90 33197475
    867 7cca:B (2.75) BS02 UMP 2.1.1.45 GO:0004799 ... Q77J90 33197475
    868 7ctz:A (2.65) BS02 UMP 1.5.1.3
    2.1.1.45    		 GO:0000166 ... Q8I1R6 33530764
    869 7ctz:A (2.65) BS04 UMP 1.5.1.3
    2.1.1.45    		 GO:0000166 ... Q8I1R6 33530764
    870 7ctz:B (2.65) BS01 UMP 1.5.1.3
    2.1.1.45    		 GO:0000166 ... Q8I1R6 33530764
    871 7ctz:B (2.65) BS03 UMP 1.5.1.3
    2.1.1.45    		 GO:0000166 ... Q8I1R6 33530764
    872 7dp4:A (1.5) BS01 UMP 2.1.1.45 GO:0004799 ... A0A4E9EZW9 N/A
    873 7dp5:A (1.6) BS01 UMP 2.1.1.45 GO:0004799 ... A0A4E9EZW9 N/A
    874 7dp6:A (1.85) BS01 UMP 2.1.1.45 GO:0004799 ... A0A4E9EZW9 N/A
    875 7f3y:A (2.252) BS03 UMP 1.5.1.3
    2.1.1.45    		 GO:0004146 ... P13922 34614393
    876 7f3y:A (2.252) BS05 UMP 1.5.1.3
    2.1.1.45    		 GO:0004146 ... P13922 34614393
    877 7f3y:B (2.252) BS01 UMP 1.5.1.3
    2.1.1.45    		 GO:0004146 ... P13922 34614393
    878 7f3y:B (2.252) BS04 UMP 1.5.1.3
    2.1.1.45    		 GO:0004146 ... P13922 34614393
    879 7f3z:A (2.6) BS02 UMP 1.5.1.3
    2.1.1.45    		 GO:0004146 ... P13922 34614393
    880 7f3z:A (2.6) BS04 UMP 1.5.1.3
    2.1.1.45    		 GO:0004146 ... P13922 34614393
    881 7f3z:B (2.6) BS01 UMP 1.5.1.3
    2.1.1.45    		 GO:0004146 ... P13922 34614393
    882 7f3z:B (2.6) BS03 UMP 1.5.1.3
    2.1.1.45    		 GO:0004146 ... P13922 34614393
    883 7fgw:A (2.15) BS03 UMP 1.5.1.3
    2.1.1.45    		 GO:0004146 ... Q07422 35715223
    884 7fgw:A (2.15) BS04 UMP 1.5.1.3
    2.1.1.45    		 GO:0004146 ... Q07422 35715223
    885 7fgw:B (2.15) BS01 UMP 1.5.1.3
    2.1.1.45    		 GO:0004146 ... Q07422 35715223
    886 7fgw:B (2.15) BS04 UMP 1.5.1.3
    2.1.1.45    		 GO:0004146 ... Q07422 35715223
    887 7fgw:C (2.15) BS03 UMP 1.5.1.3
    2.1.1.45    		 GO:0004146 ... Q07422 35715223
    888 7fgw:C (2.15) BS04 UMP 1.5.1.3
    2.1.1.45    		 GO:0004146 ... Q07422 35715223
    889 7fgw:D (2.15) BS01 UMP 1.5.1.3
    2.1.1.45    		 GO:0004146 ... Q07422 35715223
    890 7fgw:D (2.15) BS04 UMP 1.5.1.3
    2.1.1.45    		 GO:0004146 ... Q07422 35715223
    891 7fgx:A (2.05) BS03 UMP 1.5.1.3
    2.1.1.45    		 GO:0004146 ... Q07422 35715223
    892 7fgx:A (2.05) BS04 UMP 1.5.1.3
    2.1.1.45    		 GO:0004146 ... Q07422 35715223
    893 7fgx:B (2.05) BS01 UMP 1.5.1.3
    2.1.1.45    		 GO:0004146 ... Q07422 35715223
    894 7fgx:B (2.05) BS04 UMP 1.5.1.3
    2.1.1.45    		 GO:0004146 ... Q07422 35715223
    895 7fgx:C (2.05) BS03 UMP 1.5.1.3
    2.1.1.45    		 GO:0004146 ... Q07422 35715223
    896 7fgx:C (2.05) BS04 UMP 1.5.1.3
    2.1.1.45    		 GO:0004146 ... Q07422 35715223
    897 7fgx:D (2.05) BS01 UMP 1.5.1.3
    2.1.1.45    		 GO:0004146 ... Q07422 35715223
    898 7fgx:D (2.05) BS04 UMP 1.5.1.3
    2.1.1.45    		 GO:0004146 ... Q07422 35715223
    899 7fgy:A (2.67) BS03 UMP 1.5.1.3
    2.1.1.45    		 GO:0004146 ... Q07422 35715223
    900 7fgy:A (2.67) BS04 UMP 1.5.1.3
    2.1.1.45    		 GO:0004146 ... Q07422 35715223
    901 7fgy:B (2.67) BS01 UMP 1.5.1.3
    2.1.1.45    		 GO:0004146 ... Q07422 35715223
    902 7fgy:B (2.67) BS04 UMP 1.5.1.3
    2.1.1.45    		 GO:0004146 ... Q07422 35715223
    903 7fgy:C (2.67) BS03 UMP 1.5.1.3
    2.1.1.45    		 GO:0004146 ... Q07422 35715223
    904 7fgy:C (2.67) BS04 UMP 1.5.1.3
    2.1.1.45    		 GO:0004146 ... Q07422 35715223
    905 7fgy:D (2.67) BS01 UMP 1.5.1.3
    2.1.1.45    		 GO:0004146 ... Q07422 35715223
    906 7fgy:D (2.67) BS04 UMP 1.5.1.3
    2.1.1.45    		 GO:0004146 ... Q07422 35715223
    907 7n6s:A (1.75) BS01 UMP 3.6.1.23 GO:0000287 ... Q9ZDD2 N/A
    908 7n6s:A (1.75) BS02 UMP 3.6.1.23 GO:0000287 ... Q9ZDD2 N/A
    909 7n6s:B (1.75) BS01 UMP 3.6.1.23 GO:0000287 ... Q9ZDD2 N/A
    910 7n6s:C (1.75) BS01 UMP 3.6.1.23 GO:0000287 ... Q9ZDD2 N/A
    911 7n6s:D (1.75) BS01 UMP 3.6.1.23 GO:0000287 ... Q9ZDD2 N/A
    912 7n6s:E (1.75) BS01 UMP 3.6.1.23 GO:0000287 ... Q9ZDD2 N/A
    913 7n6s:E (1.75) BS02 UMP 3.6.1.23 GO:0000287 ... Q9ZDD2 N/A
    914 7n6s:F (1.75) BS01 UMP 3.6.1.23 GO:0000287 ... Q9ZDD2 N/A
    915 7n6s:F (1.75) BS02 UMP 3.6.1.23 GO:0000287 ... Q9ZDD2 N/A
    916 7s01:A (3.4) BS03 UMP ? GO:0000428 ... A0A172JIC8 35725571
    917 7s01:A (3.4) BS05 UMP ? GO:0000428 ... A0A172JIC8 35725571
    918 7s01:A (3.4) BS06 UMP ? GO:0000428 ... A0A172JIC8 35725571
    919 7s01:A (3.4) BS07 UMP ? GO:0000428 ... A0A172JIC8 35725571
    920 7s01:c (3.4) BS04 UMP ? GO:0000428 ... A0A172JI16 35725571
    921 7s01:c (3.4) BS05 UMP ? GO:0000428 ... A0A172JI16 35725571
    922 7xyj:A (2.275) BS01 UMP 2.1.1.45 GO:0004799 ... Q77J90 N/A
    923 7xyj:A (2.275) BS02 UMP 2.1.1.45 GO:0004799 ... Q77J90 N/A
    924 7xyj:B (2.275) BS01 UMP 2.1.1.45 GO:0004799 ... Q77J90 N/A
    925 7xyj:B (2.275) BS02 UMP 2.1.1.45 GO:0004799 ... Q77J90 N/A
    926 7xyj:C (2.275) BS01 UMP 2.1.1.45 GO:0004799 ... Q77J90 N/A
    927 7xyj:C (2.275) BS02 UMP 2.1.1.45 GO:0004799 ... Q77J90 N/A
    928 7xyj:D (2.275) BS01 UMP 2.1.1.45 GO:0004799 ... Q77J90 N/A
    929 7xyj:D (2.275) BS02 UMP 2.1.1.45 GO:0004799 ... Q77J90 N/A
    930 7xyk:A (1.433) BS01 UMP 2.1.1.45 GO:0004799 ... Q77J90 N/A
    931 7xyk:A (1.433) BS03 UMP 2.1.1.45 GO:0004799 ... Q77J90 N/A
    932 7xyk:B (1.433) BS01 UMP 2.1.1.45 GO:0004799 ... Q77J90 N/A
    933 7xyk:B (1.433) BS02 UMP 2.1.1.45 GO:0004799 ... Q77J90 N/A
    934 7xyk:C (1.433) BS01 UMP 2.1.1.45 GO:0004799 ... Q77J90 N/A
    935 7xyk:C (1.433) BS03 UMP 2.1.1.45 GO:0004799 ... Q77J90 N/A
    936 7xyk:D (1.433) BS01 UMP 2.1.1.45 GO:0004799 ... Q77J90 N/A
    937 7xyk:D (1.433) BS02 UMP 2.1.1.45 GO:0004799 ... Q77J90 N/A
    938 8jfb:A (2.65) BS03 UMP 1.5.1.3
    2.1.1.45    		 GO:0000166 ... D9N170 37731689
    939 8jfb:A (2.65) BS04 UMP 1.5.1.3
    2.1.1.45    		 GO:0000166 ... D9N170 37731689
    940 8jfb:B (2.65) BS01 UMP 1.5.1.3
    2.1.1.45    		 GO:0000166 ... D9N170 37731689
    941 8jfb:B (2.65) BS04 UMP 1.5.1.3
    2.1.1.45    		 GO:0000166 ... D9N170 37731689
    942 8jfc:A (2.3) BS02 UMP 1.5.1.3
    2.1.1.45    		 GO:0000166 ... D9N170 37731689
    943 8jfc:A (2.3) BS04 UMP 1.5.1.3
    2.1.1.45    		 GO:0000166 ... D9N170 37731689
    944 8jfc:B (2.3) BS01 UMP 1.5.1.3
    2.1.1.45    		 GO:0000166 ... D9N170 37731689
    945 8jfc:B (2.3) BS02 UMP 1.5.1.3
    2.1.1.45    		 GO:0000166 ... D9N170 37731689
    946 8jfd:A (2.3) BS02 UMP 1.5.1.3
    2.1.1.45    		 GO:0000166 ... D9N170 37731689
    947 8jfd:A (2.3) BS04 UMP 1.5.1.3
    2.1.1.45    		 GO:0000166 ... D9N170 37731689
    948 8jfd:B (2.3) BS01 UMP 1.5.1.3
    2.1.1.45    		 GO:0000166 ... D9N170 37731689
    949 8jfd:B (2.3) BS03 UMP 1.5.1.3
    2.1.1.45    		 GO:0000166 ... D9N170 37731689
    950 8osc:A (1.42) BS01 UMP 3.2.2.- GO:0009159 ... O43598 37582341
    951 8osc:B (1.42) BS01 UMP 3.2.2.- GO:0009159 ... O43598 37582341
    952 8wgm:A (2.15) BS02 UMP N/A N/A A7UD81 39250850
    953 8wgm:A (2.15) BS04 UMP N/A N/A A7UD81 39250850
    954 8wgm:B (2.15) BS01 UMP N/A N/A A7UD81 39250850
    955 8wgm:B (2.15) BS03 UMP N/A N/A A7UD81 39250850
    956 8yq8:A (2.1) BS03 UMP N/A N/A D9N170 39026651
    957 8yq8:A (2.1) BS04 UMP N/A N/A D9N170 39026651
    958 8yq8:B (2.1) BS01 UMP N/A N/A D9N170 39026651
    959 8yq8:B (2.1) BS04 UMP N/A N/A D9N170 39026651
    960 8yq9:A (2.4) BS03 UMP N/A N/A D9N170 39026651
    961 8yq9:A (2.4) BS04 UMP N/A N/A D9N170 39026651
    962 8yq9:B (2.4) BS01 UMP N/A N/A D9N170 39026651
    963 8yq9:B (2.4) BS04 UMP N/A N/A D9N170 39026651
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218