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BioLiP
Download all results in tab-seperated text for 16 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 4gev:A (1.3) BS01 UMC 2.1.1.45 GO:0000287 ... P0A884 23034004
    2 4gev:A (1.3) BS02 UMC 2.1.1.45 GO:0000287 ... P0A884 23034004
    3 4gev:B (1.3) BS01 UMC 2.1.1.45 GO:0000287 ... P0A884 23034004
    4 4gev:B (1.3) BS02 UMC 2.1.1.45 GO:0000287 ... P0A884 23034004
    5 4isk:B (1.752) BS01 UMC 2.1.1.45 GO:0000287 ... P0A884 23710599
    6 4isk:D (1.752) BS01 UMC 2.1.1.45 GO:0000287 ... P0A884 23710599
    7 4isk:E (1.752) BS01 UMC 2.1.1.45 GO:0000287 ... P0A884 23710599
    8 4isk:F (1.752) BS02 UMC 2.1.1.45 GO:0000287 ... P0A884 23710599
    9 4isk:H (1.752) BS01 UMC 2.1.1.45 GO:0000287 ... P0A884 23710599
    10 5jfe:A (2.03) BS02 UMC 2.1.1.148 GO:0004799 ... Q9WYT0 N/A
    11 6cdz:A (2.4) BS02 UMC 2.1.1.45 GO:0000287 ... P0A884 29717875
    12 6cdz:B (2.4) BS01 UMC 2.1.1.45 GO:0000287 ... P0A884 29717875
    13 6nnr:A (1.05) BS01 UMC 2.1.1.45 GO:0000287 ... P0A884 23611499 PDBbind: -logKd/Ki=5.07, Kd=8.5uM
    14 6nnr:A (1.05) BS02 UMC 2.1.1.45 GO:0000287 ... P0A884 23611499 PDBbind: -logKd/Ki=5.07, Kd=8.5uM
    15 6nnr:B (1.05) BS01 UMC 2.1.1.45 GO:0000287 ... P0A884 23611499 PDBbind: -logKd/Ki=5.07, Kd=8.5uM
    16 6nnr:B (1.05) BS02 UMC 2.1.1.45 GO:0000287 ... P0A884 23611499 PDBbind: -logKd/Ki=5.07, Kd=8.5uM
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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