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BioLiP
Download all results in tab-seperated text for 71 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1dlj:A (1.8) BS02 UGA 1.1.1.22 GO:0000271 ... P0C0F4 10841783
    2 1kws:A (2.1) BS02 UGA 2.4.1.135 GO:0015018 ... O94766 11950836
    3 1kws:B (2.1) BS01 UGA 2.4.1.135 GO:0015018 ... O94766 11950836
    4 1z7e:A (3.0) BS02 UGA 1.1.1.305
    2.1.2.13    		 GO:0003824 ... P77398 15939024
    5 1z7e:B (3.0) BS02 UGA 1.1.1.305
    2.1.2.13    		 GO:0003824 ... P77398 15939024
    6 1z7e:C (3.0) BS02 UGA 1.1.1.305
    2.1.2.13    		 GO:0003824 ... P77398 15939024
    7 1z7e:D (3.0) BS02 UGA 1.1.1.305
    2.1.2.13    		 GO:0003824 ... P77398 15939024
    8 1z7e:E (3.0) BS02 UGA 1.1.1.305
    2.1.2.13    		 GO:0003824 ... P77398 15939024
    9 1z7e:F (3.0) BS02 UGA 1.1.1.305
    2.1.2.13    		 GO:0003824 ... P77398 15939024
    10 2qg4:A (2.1) BS02 UGA 1.1.1.22 GO:0001702 ... O60701 21502315
    11 2qg4:B (2.1) BS02 UGA 1.1.1.22 GO:0001702 ... O60701 21502315
    12 2qg4:C (2.1) BS02 UGA 1.1.1.22 GO:0001702 ... O60701 21502315
    13 2qg4:D (2.1) BS02 UGA 1.1.1.22 GO:0001702 ... O60701 21502315
    14 2qg4:E (2.1) BS02 UGA 1.1.1.22 GO:0001702 ... O60701 21502315
    15 2qg4:F (2.1) BS02 UGA 1.1.1.22 GO:0001702 ... O60701 21502315
    16 2qg4:G (2.1) BS02 UGA 1.1.1.22 GO:0001702 ... O60701 21502315
    17 2qg4:H (2.1) BS02 UGA 1.1.1.22 GO:0001702 ... O60701 21502315
    18 2y0c:A (1.75) BS01 UGA 1.1.1.22 GO:0000271 ... C9E261 21602353
    19 2y0c:B (1.75) BS01 UGA 1.1.1.22 GO:0000271 ... C9E261 21602353
    20 2y0c:C (1.75) BS01 UGA 1.1.1.22 GO:0000271 ... C9E261 21602353
    21 2y0c:D (1.75) BS01 UGA 1.1.1.22 GO:0000271 ... C9E261 21602353
    22 2y0d:A (2.8) BS01 UGA 1.1.1.22 GO:0000271 ... C9E261 21602353
    23 2y0d:B (2.8) BS01 UGA 1.1.1.22 GO:0000271 ... C9E261 21602353
    24 2y0d:C (2.8) BS01 UGA 1.1.1.22 GO:0000271 ... C9E261 21602353
    25 2y0d:D (2.8) BS01 UGA 1.1.1.22 GO:0000271 ... C9E261 21602353
    26 2y0e:A (1.75) BS01 UGA 1.1.1.22 GO:0000271 ... C9E261 21602353
    27 2y0e:B (1.75) BS01 UGA 1.1.1.22 GO:0000271 ... C9E261 21602353
    28 2y0e:C (1.75) BS01 UGA 1.1.1.22 GO:0000271 ... C9E261 21602353
    29 2y0e:D (1.75) BS01 UGA 1.1.1.22 GO:0000271 ... C9E261 21602353
    30 2z86:A (2.4) BS01 UGA 2.4.1.175
    2.4.1.226    		 GO:0016757 ... Q8L0V4 18771653
    31 2z86:A (2.4) BS02 UGA 2.4.1.175
    2.4.1.226    		 GO:0016757 ... Q8L0V4 18771653
    32 2z86:B (2.4) BS02 UGA 2.4.1.175
    2.4.1.226    		 GO:0016757 ... Q8L0V4 18771653
    33 2z86:C (2.4) BS02 UGA 2.4.1.175
    2.4.1.226    		 GO:0016757 ... Q8L0V4 18771653
    34 2z86:D (2.4) BS01 UGA 2.4.1.175
    2.4.1.226    		 GO:0016757 ... Q8L0V4 18771653
    35 2z86:D (2.4) BS02 UGA 2.4.1.175
    2.4.1.226    		 GO:0016757 ... Q8L0V4 18771653
    36 3gg2:A (1.7) BS01 UGA 1.1.1.22 GO:0000271 ... Q7MVC7 N/A
    37 3gg2:A (1.7) BS02 UGA 1.1.1.22 GO:0000271 ... Q7MVC7 N/A
    38 3gg2:A (1.7) BS03 UGA 1.1.1.22 GO:0000271 ... Q7MVC7 N/A
    39 3gg2:B (1.7) BS01 UGA 1.1.1.22 GO:0000271 ... Q7MVC7 N/A
    40 3gg2:C (1.7) BS01 UGA 1.1.1.22 GO:0000271 ... Q7MVC7 N/A
    41 3gg2:D (1.7) BS01 UGA 1.1.1.22 GO:0000271 ... Q7MVC7 N/A
    42 3gg2:D (1.7) BS02 UGA 1.1.1.22 GO:0000271 ... Q7MVC7 N/A
    43 3gg2:D (1.7) BS03 UGA 1.1.1.22 GO:0000271 ... Q7MVC7 N/A
    44 3pjg:A (2.7) BS01 UGA 1.1.1.22 GO:0000166 ... A0A0J9WZA6 21536136 PDBbind: -logKd/Ki=3.55, Ki=283uM
    45 3pjg:A (2.7) BS02 UGA 1.1.1.22 GO:0000166 ... A0A0J9WZA6 21536136 PDBbind: -logKd/Ki=3.55, Ki=283uM
    46 4lk3:A (2.64) BS03 UGA 4.1.1.35 GO:0042732 ... Q8NBZ7 25521717
    47 4lk3:B (2.64) BS01 UGA 4.1.1.35 GO:0042732 ... Q8NBZ7 25521717
    48 4lk3:B (2.64) BS04 UGA 4.1.1.35 GO:0042732 ... Q8NBZ7 25521717
    49 4lk3:C (2.64) BS02 UGA 4.1.1.35 GO:0042732 ... Q8NBZ7 25521717
    50 4lk3:D (2.64) BS03 UGA 4.1.1.35 GO:0042732 ... Q8NBZ7 25521717
    51 4lk3:E (2.64) BS02 UGA 4.1.1.35 GO:0042732 ... Q8NBZ7 25521717
    52 4lk3:E (2.64) BS03 UGA 4.1.1.35 GO:0042732 ... Q8NBZ7 25521717
    53 4lk3:F (2.64) BS02 UGA 4.1.1.35 GO:0042732 ... Q8NBZ7 25521717
    54 6h0p:A (3.47) BS02 UGA ? GO:0005737 ... Q9ZUY6 31844840
    55 6h0p:B (3.47) BS02 UGA ? GO:0005737 ... Q9ZUY6 31844840
    56 6kv9:A (1.48) BS02 UGA ? GO:0000166 ... A0A003 31653344
    57 6tes:A (2.2) BS05 UGA 1.14.11.4
    2.4.1.50
    2.4.1.66    		 GO:0001701 ... O60568 N/A
    58 6tez:A (2.7) BS01 UGA 1.14.11.4
    2.4.1.50
    2.4.1.66    		 GO:0001701 ... O60568 N/A
    59 6zld:A (1.8) BS02 UGA N/A N/A N/A 32661196
    60 6zld:B (1.8) BS02 UGA N/A N/A N/A 32661196
    61 6zlk:A (1.5) BS02 UGA N/A N/A N/A 32661196
    62 6zlk:B (1.5) BS02 UGA N/A N/A N/A 32661196
    63 6zlk:C (1.5) BS02 UGA N/A N/A N/A 32661196
    64 6zlk:D (1.5) BS02 UGA N/A N/A N/A 32661196
    65 8gjh:A (3.6) BS01 UGA 1.1.1.305
    2.1.2.13    		 GO:0003824 ... O52325 37410993
    66 8gjh:B (3.6) BS01 UGA 1.1.1.305
    2.1.2.13    		 GO:0003824 ... O52325 37410993
    67 8gjh:C (3.6) BS01 UGA 1.1.1.305
    2.1.2.13    		 GO:0003824 ... O52325 37410993
    68 8gjh:D (3.6) BS01 UGA 1.1.1.305
    2.1.2.13    		 GO:0003824 ... O52325 37410993
    69 8gjh:E (3.6) BS01 UGA 1.1.1.305
    2.1.2.13    		 GO:0003824 ... O52325 37410993
    70 8gjh:F (3.6) BS01 UGA 1.1.1.305
    2.1.2.13    		 GO:0003824 ... O52325 37410993
    71 8snd:A (3.1) BS01 UGA ? GO:0016020 ... M1H2Q1 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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