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BioLiP
Download all results in tab-seperated text for 67 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1dli:A (2.31) BS02 UDX 1.1.1.22 GO:0000271 ... P0C0F4 10841783
    2 3prj:A (3.1) BS02 UDX 1.1.1.22 GO:0001702 ... O60701 21595445
    3 3prj:B (3.1) BS02 UDX 1.1.1.22 GO:0001702 ... O60701 21595445
    4 3prj:C (3.1) BS02 UDX 1.1.1.22 GO:0001702 ... O60701 21595445
    5 3prj:D (3.1) BS02 UDX 1.1.1.22 GO:0001702 ... O60701 21595445
    6 3prj:E (3.1) BS02 UDX 1.1.1.22 GO:0001702 ... O60701 21595445
    7 3prj:F (3.1) BS02 UDX 1.1.1.22 GO:0001702 ... O60701 21595445
    8 3ptz:A (2.5) BS02 UDX 1.1.1.22 GO:0001702 ... O60701 21595445
    9 3ptz:B (2.5) BS02 UDX 1.1.1.22 GO:0001702 ... O60701 21595445
    10 3ptz:C (2.5) BS02 UDX 1.1.1.22 GO:0001702 ... O60701 21595445
    11 3ptz:D (2.5) BS02 UDX 1.1.1.22 GO:0001702 ... O60701 21595445
    12 3ptz:E (2.5) BS02 UDX 1.1.1.22 GO:0001702 ... O60701 21595445
    13 3ptz:F (2.5) BS02 UDX 1.1.1.22 GO:0001702 ... O60701 21595445
    14 4wnh:A (1.95) BS04 UDX 2.4.2.62 GO:0016757 ... Q3U4G3 N/A
    15 5ux7:B (2.69) BS01 UDX 2.4.1.11 GO:0004373 ... P27472 N/A
    16 5ux7:C (2.69) BS01 UDX 2.4.1.11 GO:0004373 ... P27472 N/A
    17 5vr8:A (1.999) BS01 UDX 1.1.1.22 GO:0001702 ... O60701 30420606 PDBbind: -logKd/Ki=6.87, Kd=0.135uM
    18 5vr8:A (1.999) BS02 UDX 1.1.1.22 GO:0001702 ... O60701 30420606 PDBbind: -logKd/Ki=6.87, Kd=0.135uM
    19 5vr8:B (1.999) BS01 UDX 1.1.1.22 GO:0001702 ... O60701 30420606
    20 5vr8:B (1.999) BS02 UDX 1.1.1.22 GO:0001702 ... O60701 30420606
    21 5vr8:C (1.999) BS02 UDX 1.1.1.22 GO:0001702 ... O60701 30420606
    22 5vr8:D (1.999) BS01 UDX 1.1.1.22 GO:0001702 ... O60701 30420606
    23 5vr8:D (1.999) BS02 UDX 1.1.1.22 GO:0001702 ... O60701 30420606
    24 5vr8:E (1.999) BS01 UDX 1.1.1.22 GO:0001702 ... O60701 30420606
    25 5vr8:E (1.999) BS02 UDX 1.1.1.22 GO:0001702 ... O60701 30420606
    26 5vr8:F (1.999) BS02 UDX 1.1.1.22 GO:0001702 ... O60701 30420606
    27 6c58:A (2.198) BS01 UDX 1.1.1.22 GO:0001702 ... O60701 N/A
    28 6c58:A (2.198) BS02 UDX 1.1.1.22 GO:0001702 ... O60701 N/A
    29 6c58:B (2.198) BS01 UDX 1.1.1.22 GO:0001702 ... O60701 N/A
    30 6c58:B (2.198) BS02 UDX 1.1.1.22 GO:0001702 ... O60701 N/A
    31 6c58:C (2.198) BS01 UDX 1.1.1.22 GO:0001702 ... O60701 N/A
    32 6c58:C (2.198) BS02 UDX 1.1.1.22 GO:0001702 ... O60701 N/A
    33 6c58:D (2.198) BS01 UDX 1.1.1.22 GO:0001702 ... O60701 N/A
    34 6c58:E (2.198) BS01 UDX 1.1.1.22 GO:0001702 ... O60701 N/A
    35 6c58:F (2.198) BS01 UDX 1.1.1.22 GO:0001702 ... O60701 N/A
    36 6c58:F (2.198) BS02 UDX 1.1.1.22 GO:0001702 ... O60701 N/A
    37 6ej7:A (2.0) BS02 UDX 2.4.2.26 GO:0016020 ... Q86Y38 29681470
    38 6kvj:A (2.499) BS01 UDX 2.4.1.- GO:0008194 ... Q6VAB4 33404544
    39 6om8:A (2.449) BS01 UDX 1.1.1.22 GO:0002009 ... Q19905 31616809 PDBbind: -logKd/Ki=5.16, Ki=6.9uM
    40 6om8:A (2.449) BS02 UDX 1.1.1.22 GO:0002009 ... Q19905 31616809 PDBbind: -logKd/Ki=5.16, Ki=6.9uM
    41 6om8:B (2.449) BS01 UDX 1.1.1.22 GO:0002009 ... Q19905 31616809
    42 6om8:B (2.449) BS02 UDX 1.1.1.22 GO:0002009 ... Q19905 31616809
    43 6om8:C (2.449) BS01 UDX 1.1.1.22 GO:0002009 ... Q19905 31616809
    44 6om8:C (2.449) BS02 UDX 1.1.1.22 GO:0002009 ... Q19905 31616809
    45 6om8:D (2.449) BS01 UDX 1.1.1.22 GO:0002009 ... Q19905 31616809
    46 6om8:D (2.449) BS02 UDX 1.1.1.22 GO:0002009 ... Q19905 31616809
    47 6om8:E (2.449) BS01 UDX 1.1.1.22 GO:0002009 ... Q19905 31616809
    48 6om8:E (2.449) BS02 UDX 1.1.1.22 GO:0002009 ... Q19905 31616809
    49 6om8:F (2.449) BS01 UDX 1.1.1.22 GO:0002009 ... Q19905 31616809
    50 6om8:F (2.449) BS02 UDX 1.1.1.22 GO:0002009 ... Q19905 31616809
    51 6om8:G (2.449) BS01 UDX 1.1.1.22 GO:0002009 ... Q19905 31616809
    52 6om8:G (2.449) BS02 UDX 1.1.1.22 GO:0002009 ... Q19905 31616809
    53 6om8:H (2.449) BS01 UDX 1.1.1.22 GO:0002009 ... Q19905 31616809
    54 6om8:H (2.449) BS02 UDX 1.1.1.22 GO:0002009 ... Q19905 31616809
    55 6om8:I (2.449) BS01 UDX 1.1.1.22 GO:0002009 ... Q19905 31616809
    56 6om8:I (2.449) BS02 UDX 1.1.1.22 GO:0002009 ... Q19905 31616809
    57 6om8:J (2.449) BS01 UDX 1.1.1.22 GO:0002009 ... Q19905 31616809
    58 6om8:J (2.449) BS02 UDX 1.1.1.22 GO:0002009 ... Q19905 31616809
    59 6om8:K (2.449) BS01 UDX 1.1.1.22 GO:0002009 ... Q19905 31616809
    60 6om8:K (2.449) BS02 UDX 1.1.1.22 GO:0002009 ... Q19905 31616809
    61 6om8:L (2.449) BS01 UDX 1.1.1.22 GO:0002009 ... Q19905 31616809
    62 6om8:L (2.449) BS02 UDX 1.1.1.22 GO:0002009 ... Q19905 31616809
    63 6tec:A (2.4) BS01 UDX 1.14.11.4
    2.4.1.50
    2.4.1.66    		 GO:0001701 ... O60568 N/A
    64 8avq:A (2.0) BS01 UDX ? GO:0046872 ... Q89410 N/A
    65 8avq:B (2.0) BS01 UDX ? GO:0046872 ... Q89410 N/A
    66 8avq:C (2.0) BS01 UDX ? GO:0046872 ... Q89410 N/A
    67 8avq:D (2.0) BS01 UDX ? GO:0046872 ... Q89410 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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