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BioLiP
Download all results in tab-seperated text for 15 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6wtx:A (3.92) BS03 UB7 ? GO:0005886 ... Q9KNE0 32869741
    2 6wtx:B (3.92) BS01 UB7 ? GO:0005886 ... Q9KNE0 32869741
    3 6wtx:C (3.92) BS01 UB7 ? GO:0005886 ... Q9KNE0 32869741
    4 6wtx:D (3.92) BS01 UB7 ? GO:0005886 ... Q9KNE0 32869741
    5 7nds:A (2.4) BS01 UB7 ? N/A A0A5N7XFM8 34716322
    6 7q05:D (2.08) BS02 UB7 1.14.12.15 GO:0005506 ... Q3C1D5 35312352
    7 7q05:E (2.08) BS02 UB7 1.14.12.15 GO:0005506 ... Q3C1D5 35312352
    8 7q05:F (2.08) BS02 UB7 1.14.12.15 GO:0005506 ... Q3C1D5 35312352
    9 7v28:B (3.07) BS03 UB7 ? GO:0005506 ... B7WQT1 34800435
    10 8bra:B (1.7) BS01 UB7 N/A N/A N/A 37019924
    11 8brb:A (1.7) BS01 UB7 N/A N/A N/A 37019924
    12 8brb:B (1.7) BS01 UB7 N/A N/A N/A 37019924
    13 8g36:A (2.1) BS02 UB7 ? GO:0004497 ... Q2IU02 37042073
    14 8hka:A (1.02) BS01 UB7 ? N/A A0A0K8P8D2 37295700
    15 8hkb:A (1.4) BS01 UB7 ? N/A A0A0K8P8D2 37295700
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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