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BioLiP
Download all results in tab-seperated text for 10 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1n3z:A (1.65) BS01 U3P 4.6.1.18 GO:0003676 ... P00669 12833549 PDBbind: -logKd/Ki=4.20, Ki=63.2uM
    BindingDB: Ki=63200nM
    2 1o0n:A (1.5) BS01 U3P 4.6.1.18 GO:0003676 ... P61823 14573867 MOAD: Ki=82uM
    PDBbind: -logKd/Ki=4.09, Ki=82uM
    BindingDB: Ki=78500nM
    3 1o0n:B (1.5) BS01 U3P 4.6.1.18 GO:0003676 ... P61823 14573867 MOAD: Ki=82uM
    BindingDB: Ki=78500nM
    4 1ucc:A (1.77) BS01 U3P 4.6.1.19 GO:0003723 ... P23540 10964705
    5 4rsk:A (2.1) BS01 U3P 4.6.1.18 GO:0003676 ... P61823 9860854 MOAD: Kd=47.4uM
    PDBbind: -logKd/Ki=4.32, Kd=47.4uM
    BindingDB: Ki=78500nM
    6 4wyz:A (1.449) BS01 U3P 4.6.1.18 GO:0003676 ... P61823 26655472 MOAD: Kd=50uM
    PDBbind: -logKd/Ki=4.30, Kd=50uM
    BindingDB: Ki=78500nM
    7 4wyz:B (1.449) BS01 U3P 4.6.1.18 GO:0003676 ... P61823 26655472 MOAD: Kd=50uM
    BindingDB: Ki=78500nM
    8 6wre:A (2.0) BS03 U3P 3.1.13.-
    3.6.1.-
    GO:0000166 ... O70348 31777937
    9 6x4i:A (1.85) BS01 U3P 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-
    N/A P0DTD1 33564093
    10 6x4i:B (1.85) BS01 U3P 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-
    N/A P0DTD1 33564093

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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