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BioLiP
Download all results in tab-seperated text for 49 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1uqt:A (2.0) BS01 U2F 2.4.1.15 GO:0003824 ... P31677 14570926
    2 1uqt:B (2.0) BS01 U2F 2.4.1.15 GO:0003824 ... P31677 14570926
    3 2am4:A (1.7) BS01 U2F 2.4.1.101 GO:0006486 ... P27115 16769084 MOAD: Ki=190uM
    PDBbind: -logKd/Ki=3.72, Ki=190uM
    4 2c1z:A (1.9) BS02 U2F 2.4.1.115
    2.4.1.91    		 GO:0008194 ... P51094 16482224
    5 2iw1:A (1.5) BS01 U2F 2.4.1.- GO:0005886 ... P25740 17113996
    6 2vce:A (1.9) BS01 U2F 2.4.1.-
    2.4.1.218    		 GO:0006805 ... Q9M156 18077347
    7 3h4i:A (1.3) BS01 U2F 2.4.-.-
    2.4.1.311    		 GO:0005975 ... P96558
    Q6ZZJ7    		 19549605
    8 5tmd:A (2.19) BS01 U2F 2.4.1.- GO:0000166 ... Q7XT97 27715009
    9 5uqk:A (1.851) BS01 U2F 2.4.1.-
    3.4.22.-    		 GO:0016757 ... P16154 28433497
    10 5uql:A (1.97) BS02 U2F 2.4.1.-
    3.4.22.-    		 GO:0016757 ... P16154 28433497
    11 5uqm:A (2.03) BS02 U2F 2.4.1.-
    3.4.22.-    		 GO:0016757 ... P18177 28433497
    12 5uqn:A (2.06) BS02 U2F 2.4.1.-
    3.4.22.-    		 GO:0016757 ... P18177 28433497
    13 5uw0:C (2.73) BS01 U2F 2.4.1.11 GO:0004373 ... P27472 N/A
    14 6jem:A (2.6) BS01 U2F 2.4.1.- GO:0008194 ... B5MGN7 32525309
    15 6jem:B (2.6) BS01 U2F 2.4.1.- GO:0008194 ... B5MGN7 32525309
    16 6jem:C (2.6) BS01 U2F 2.4.1.- GO:0008194 ... B5MGN7 32525309
    17 6jen:A (2.65) BS02 U2F 2.4.1.- GO:0008194 ... B5MGN7 32525309
    18 6jen:B (2.65) BS02 U2F 2.4.1.- GO:0008194 ... B5MGN7 32525309
    19 6jen:C (2.65) BS02 U2F 2.4.1.- GO:0008194 ... B5MGN7 32525309
    20 6yjv:AAA (1.7) BS02 U2F 2.4.1.155 GO:0006487 ... Q09328 N/A
    21 6yjv:BBB (1.7) BS02 U2F 2.4.1.155 GO:0006487 ... Q09328 N/A
    22 7msk:A (2.06) BS02 U2F N/A GO:0018240 ... N/A 34283964
    23 7msk:B (2.06) BS02 U2F N/A GO:0018240 ... N/A 34283964
    24 7vej:A (1.85) BS02 U2F 2.4.1.- GO:0008194 ... B5MGN9 35234151
    25 7vej:B (1.85) BS02 U2F 2.4.1.- GO:0008194 ... B5MGN9 35234151
    26 7vek:A (2.6) BS02 U2F 2.4.1.- GO:0008194 ... B5MGN9 35234151
    27 7vek:B (2.6) BS03 U2F 2.4.1.- GO:0008194 ... B5MGN9 35234151
    28 7vel:A (2.15) BS02 U2F 2.4.1.- GO:0008194 ... B5MGN9 35234151
    29 7vel:B (2.15) BS02 U2F 2.4.1.- GO:0008194 ... B5MGN9 35234151
    30 7zlu:A (2.049) BS01 U2F ? GO:0003980 ... G0SB58 37822503
    31 7zlu:B (2.049) BS01 U2F ? GO:0003980 ... G0SB58 37822503
    32 7zlu:C (2.049) BS01 U2F ? GO:0003980 ... G0SB58 37822503
    33 8j2s:A () BS01 U2F 2.4.1.- N/A N/A N/A
    34 8j2s:B () BS01 U2F 2.4.1.- N/A N/A N/A
    35 8j2s:C () BS01 U2F 2.4.1.- N/A N/A N/A
    36 8j2s:D () BS01 U2F 2.4.1.- N/A N/A N/A
    37 8j2s:E () BS01 U2F 2.4.1.- N/A N/A N/A
    38 8j2s:F () BS01 U2F 2.4.1.- N/A N/A N/A
    39 8j2s:G () BS01 U2F 2.4.1.- N/A N/A N/A
    40 8p0p:A (2.73) BS01 U2F N/A N/A N/A 37723184
    41 9j9c:A (3.1) BS01 U2F N/A N/A A0A8K1ZRH3 N/A
    42 9j9c:B (3.1) BS01 U2F N/A N/A A0A8K1ZRH3 N/A
    43 9j9c:C (3.1) BS01 U2F N/A N/A A0A8K1ZRH3 N/A
    44 9j9c:D (3.1) BS01 U2F N/A N/A A0A8K1ZRH3 N/A
    45 9j9c:E (3.1) BS01 U2F N/A N/A A0A8K1ZRH3 N/A
    46 9j9c:F (3.1) BS01 U2F N/A N/A A0A8K1ZRH3 N/A
    47 9j9c:G (3.1) BS01 U2F N/A N/A A0A8K1ZRH3 N/A
    48 9j9k:A (3.15) BS02 U2F N/A N/A A0A8K1ZRH3 N/A
    49 9j9k:B (3.15) BS02 U2F N/A N/A A0A8K1ZRH3 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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