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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 570 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    401 7vy2:L (2.75) BS10 U10 N/A GO:0009772 ... N/A 35393413
    402 7vy2:M (2.75) BS02 U10 N/A GO:0009772 ... N/A 35393413
    403 7vy2:M (2.75) BS08 U10 N/A GO:0009772 ... N/A 35393413
    404 7vy2:a (2.75) BS05 U10 N/A GO:0016020 ... N/A 35393413
    405 7vy2:d (2.75) BS03 U10 N/A GO:0016020 ... N/A 35393413
    406 7vy2:l (2.75) BS03 U10 N/A GO:0009772 ... N/A 35393413
    407 7vy2:l (2.75) BS04 U10 N/A GO:0009772 ... N/A 35393413
    408 7vy2:l (2.75) BS09 U10 N/A GO:0009772 ... N/A 35393413
    409 7vy2:l (2.75) BS10 U10 N/A GO:0009772 ... N/A 35393413
    410 7vy2:m (2.75) BS02 U10 N/A GO:0009772 ... N/A 35393413
    411 7vy2:m (2.75) BS08 U10 N/A GO:0009772 ... N/A 35393413
    412 7vy2:x (2.75) BS03 U10 N/A N/A N/A 35393413
    413 7vy3:A (2.63) BS06 U10 N/A GO:0016020 ... N/A 35393413
    414 7vy3:D (2.63) BS04 U10 N/A GO:0016020 ... N/A 35393413
    415 7vy3:E (2.63) BS04 U10 N/A GO:0016020 ... N/A 35393413
    416 7vy3:L (2.63) BS03 U10 N/A GO:0009772 ... N/A 35393413
    417 7vy3:L (2.63) BS04 U10 N/A GO:0009772 ... N/A 35393413
    418 7vy3:L (2.63) BS09 U10 N/A GO:0009772 ... N/A 35393413
    419 7vy3:L (2.63) BS10 U10 N/A GO:0009772 ... N/A 35393413
    420 7vy3:M (2.63) BS03 U10 N/A GO:0009772 ... N/A 35393413
    421 7vy3:M (2.63) BS10 U10 N/A GO:0009772 ... N/A 35393413
    422 7xxf:7 (2.24) BS02 U10 ? GO:0005886 ... A0A2S6NEK3 36344631
    423 7xxf:9 (2.24) BS03 U10 ? GO:0005886 ... A0A2S6NEK3 36344631
    424 7xxf:L (2.24) BS03 U10 ? GO:0009772 ... A0A2S6NEG7 36344631
    425 7xxf:L (2.24) BS04 U10 ? GO:0009772 ... A0A2S6NEG7 36344631
    426 7xxf:L (2.24) BS05 U10 ? GO:0009772 ... A0A2S6NEG7 36344631
    427 7xxf:L (2.24) BS10 U10 ? GO:0009772 ... A0A2S6NEG7 36344631
    428 7yml:A (2.6) BS01 U10 ? GO:0005886 ... P02948 36792596
    429 7yml:D (2.6) BS01 U10 ? GO:0005886 ... P02948 36792596
    430 7yml:L (2.6) BS03 U10 ? GO:0009772 ... P19057 36792596
    431 7yml:L (2.6) BS04 U10 ? GO:0009772 ... P19057 36792596
    432 7yml:L (2.6) BS06 U10 ? GO:0009772 ... P19057 36792596
    433 7yml:L (2.6) BS10 U10 ? GO:0009772 ... P19057 36792596
    434 7yml:M (2.6) BS07 U10 ? GO:0009772 ... P11847 36792596
    435 7yml:X (2.6) BS01 U10 ? GO:0005886 ... P26240 36792596
    436 7z8d:M (2.14) BS05 U10 ? GO:0009772 ... P0C0Y9 N/A
    437 8asi:A (2.9) BS03 U10 7.1.1.8 GO:0005886 ... Q3IY09 36913593
    438 8asi:F (2.9) BS03 U10 ? GO:0005886 ... Q3IY10 36913593
    439 8asj:F (3.75) BS03 U10 ? GO:0005886 ... Q3IY10 36913593
    440 8b64:L (2.589) BS03 U10 ? GO:0009772 ... P19057 36738736
    441 8b64:L (2.589) BS04 U10 ? GO:0009772 ... P19057 36738736
    442 8b64:L (2.589) BS07 U10 ? GO:0009772 ... P19057 36738736
    443 8b64:M (2.589) BS02 U10 ? GO:0009772 ... P11847 36738736
    444 8b64:M (2.589) BS05 U10 ? GO:0009772 ... P11847 36738736
    445 8c3f:L (2.6) BS03 U10 ? GO:0009772 ... Q3J1A5 36837660
    446 8c3f:L (2.6) BS08 U10 ? GO:0009772 ... Q3J1A5 36837660
    447 8c3f:M (2.6) BS07 U10 ? GO:0009772 ... Q3J1A6 36837660
    448 8c5x:L (2.6) BS04 U10 ? GO:0009772 ... Q3J1A5 36837657
    449 8c5x:L (2.6) BS08 U10 ? GO:0009772 ... Q3J1A5 36837657
    450 8c5x:M (2.6) BS07 U10 ? GO:0009772 ... Q3J1A6 36837657
    451 8c6k:L (2.86) BS04 U10 ? GO:0009772 ... Q3J1A5 36837657
    452 8c6k:L (2.86) BS08 U10 ? GO:0009772 ... Q3J1A5 36837657
    453 8c6k:M (2.86) BS07 U10 ? GO:0009772 ... Q3J1A6 36837657
    454 8c7c:L (2.6) BS07 U10 ? GO:0009772 ... Q3J1A5 36837657
    455 8c7c:M (2.6) BS07 U10 ? GO:0009772 ... Q3J1A6 36837657
    456 8c87:M (2.45) BS08 U10 ? GO:0009772 ... Q3J1A6 36837657
    457 8c88:L (2.75) BS07 U10 ? GO:0009772 ... Q3J1A5 36837657
    458 8c88:M (2.75) BS08 U10 ? GO:0009772 ... Q3J1A6 36837657
    459 8e73:1M (3.2) BS01 U10 7.1.1.2 GO:0003954 ... E9KZL0 36581760
    460 8e73:S7 (3.2) BS01 U10 ? GO:0005739 ... A0A1S3U8J5 36581760
    461 8esz:1 (3.4) BS01 U10 7.1.1.2 GO:0005739 ... C7DZL9 36952377
    462 8esz:S2 (3.4) BS02 U10 ? GO:0003954 ... Q9V4E0 36952377
    463 8esz:S7 (3.4) BS02 U10 ? GO:0000302 ... Q9VXK7 36952377
    464 8gy2:B (2.5) BS05 U10 1.1.5.5 GO:0005506 ... Q47945 N/A
    465 8gy3:A (2.7) BS04 U10 1.2.99.7 GO:0005506 ... Q5DW50 N/A
    466 8gym:2N (2.96) BS01 U10 ? GO:0016020 ... W7XF00 37248254
    467 8gym:2n (2.96) BS01 U10 ? GO:0016020 ... W7XF00 37248254
    468 8gym:5B (2.96) BS01 U10 ? GO:0005739 ... Q951C2 37248254
    469 8gym:5b (2.96) BS01 U10 ? GO:0005739 ... Q951C2 37248254
    470 8gym:B8 (2.96) BS01 U10 ? N/A I7M855 37248254
    471 8gym:N5 (2.96) BS02 U10 1.6.5.3 GO:0003954 ... Q950Z0 37248254
    472 8gym:QC (2.96) BS04 U10 1.10.2.2 GO:0005739 ... Q950Z1 37248254
    473 8gym:QC (2.96) BS05 U10 1.10.2.2 GO:0005739 ... Q950Z1 37248254
    474 8gym:QH (2.96) BS01 U10 ? N/A I7M484 37248254
    475 8gym:Qc (2.96) BS02 U10 1.10.2.2 GO:0005739 ... Q950Z1 37248254
    476 8gym:Qc (2.96) BS05 U10 1.10.2.2 GO:0005739 ... Q950Z1 37248254
    477 8gym:Qh (2.96) BS01 U10 ? N/A I7M484 37248254
    478 8gym:SB (2.96) BS04 U10 1.3.5.1 GO:0005743 ... I7M403 37248254
    479 8gym:SC (2.96) BS01 U10 ? N/A Q23RH8 37248254
    480 8gym:b8 (2.96) BS01 U10 ? N/A I7M855 37248254
    481 8gym:n5 (2.96) BS02 U10 1.6.5.3 GO:0003954 ... Q950Z0 37248254
    482 8gym:qC (2.96) BS04 U10 1.10.2.2 GO:0005739 ... Q950Z1 37248254
    483 8gym:qC (2.96) BS05 U10 1.10.2.2 GO:0005739 ... Q950Z1 37248254
    484 8gym:qH (2.96) BS01 U10 ? N/A I7M484 37248254
    485 8gym:qc (2.96) BS02 U10 1.10.2.2 GO:0005739 ... Q950Z1 37248254
    486 8gym:qc (2.96) BS05 U10 1.10.2.2 GO:0005739 ... Q950Z1 37248254
    487 8gym:qh (2.96) BS01 U10 ? N/A I7M484 37248254
    488 8gym:sb (2.96) BS04 U10 1.3.5.1 GO:0005743 ... I7M403 37248254
    489 8gym:sc (2.96) BS01 U10 ? N/A Q23RH8 37248254
    490 8iao:AC (4.2) BS03 U10 N/A N/A P00158 N/A
    491 8iao:Ac (4.2) BS03 U10 N/A N/A P00158 N/A
    492 8iar:AC (3.4) BS03 U10 N/A N/A P00158 N/A
    493 8iar:Ac (3.4) BS03 U10 N/A N/A P00158 N/A
    494 8ib4:AC (4.3) BS03 U10 N/A N/A P00158 N/A
    495 8ib4:Ac (4.3) BS03 U10 N/A N/A P00158 N/A
    496 8ib7:AC (3.4) BS03 U10 N/A N/A P00158 N/A
    497 8ib7:Ac (3.4) BS03 U10 N/A N/A P00158 N/A
    498 8ib9:AC (4.3) BS03 U10 N/A N/A P00158 N/A
    499 8ib9:Ac (4.3) BS03 U10 N/A N/A P00158 N/A
    500 8ibc:AC (3.6) BS03 U10 N/A N/A P00158 N/A
    501 8ibc:Ac (3.6) BS03 U10 N/A N/A P00158 N/A
    502 8ibd:Ac (4.2) BS03 U10 N/A N/A P00158 N/A
    503 8ibg:Ac (3.8) BS03 U10 N/A N/A P00158 N/A
    504 8ic2:Ac (6.3) BS03 U10 N/A N/A P00158 N/A
    505 8ic5:Ac (4.1) BS03 U10 N/A N/A P00158 N/A
    506 8iuf:B5 (2.81) BS01 U10 N/A N/A N/A 38388527
    507 8iuf:N4 (2.81) BS01 U10 7.1.1.2 GO:0003954 ... A0A0S2YRV6 38388527
    508 8j9h:B5 (3.11) BS01 U10 N/A N/A N/A 38388527
    509 8j9h:N4 (3.11) BS01 U10 7.1.1.2 GO:0003954 ... A0A0S2YRV6 38388527
    510 8j9i:B5 (2.87) BS01 U10 N/A N/A N/A 38388527
    511 8j9i:N4 (2.87) BS01 U10 7.1.1.2 GO:0003954 ... A0A0S2YRV6 38388527
    512 8j9j:B5 (3.03) BS01 U10 N/A N/A N/A 38388527
    513 8j9j:N4 (3.03) BS01 U10 7.1.1.2 GO:0003954 ... A0A0S2YRV6 38388527
    514 8jej:C (2.5) BS04 U10 ? GO:0005506 ... M1V1V5 N/A
    515 8jek:C (2.7) BS04 U10 ? GO:0005506 ... M1V1V5 N/A
    516 8k6j:C (2.77) BS04 U10 ? N/A M1V1V5 N/A
    517 8k6k:C (2.4) BS04 U10 ? N/A M1V1V5 N/A
    518 8q0m:B (3.1) BS02 U10 7.1.1.2 GO:0003954 ... P42026 38870289
    519 8q0m:D (3.1) BS01 U10 7.1.1.2 GO:0003954 ... P17694 38870289
    520 8q0m:H (3.1) BS01 U10 7.1.1.2 GO:0003954 ... P03887 38870289
    521 8q1b:C (3.4) BS03 U10 ? GO:0005739 ... P05501 37939086
    522 8q1b:N (3.4) BS03 U10 ? GO:0005739 ... P05501 37939086
    523 8q1u:H (3.3) BS01 U10 7.1.1.2 GO:0003954 ... P03887 38870289
    524 8q25:H (2.8) BS01 U10 7.1.1.2 GO:0003954 ... P03887 38870289
    525 8q45:B (2.7) BS02 U10 7.1.1.2 GO:0003954 ... P42026 38870289
    526 8q45:D (2.7) BS02 U10 7.1.1.2 GO:0003954 ... P17694 38870289
    527 8q45:H (2.7) BS01 U10 7.1.1.2 GO:0003954 ... P03887 38870289
    528 8q47:B (2.9) BS02 U10 7.1.1.2 GO:0003954 ... P42026 38870289
    529 8q47:H (2.9) BS01 U10 7.1.1.2 GO:0003954 ... P03887 38870289
    530 8q48:B (2.5) BS02 U10 7.1.1.2 GO:0003954 ... P42026 38870289
    531 8q48:D (2.5) BS02 U10 7.1.1.2 GO:0003954 ... P17694 38870289
    532 8q48:H (2.5) BS01 U10 7.1.1.2 GO:0003954 ... P03887 38870289
    533 8q4a:B (2.6) BS02 U10 7.1.1.2 GO:0003954 ... P42026 38870289
    534 8q4a:H (2.6) BS01 U10 7.1.1.2 GO:0003954 ... P03887 38870289
    535 8qby:H (2.3) BS02 U10 N/A N/A A1B487 N/A
    536 8smr:C (2.7) BS02 U10 7.1.1.8 GO:0005886 ... Q9HVY4 37751552
    537 8smr:D (2.7) BS04 U10 ? GO:0005886 ... Q9HVY5 37751552
    538 8smr:I (2.7) BS03 U10 ? GO:0005886 ... Q9HVY5 37751552
    539 8smr:Z (2.7) BS03 U10 7.1.1.8 GO:0005886 ... Q9HVY4 37751552
    540 8snh:D (2.7) BS04 U10 ? GO:0005886 ... Q9HVY5 37751552
    541 8snh:I (2.7) BS04 U10 ? GO:0005886 ... Q9HVY5 37751552
    542 8snh:Z (2.7) BS03 U10 7.1.1.8 GO:0005886 ... Q9HVY4 37751552
    543 8uep:1B (3.4) BS02 U10 N/A GO:0046872 ... A0A4X1VVS8 38811722
    544 8uep:1D (3.4) BS02 U10 N/A GO:0051539 ... A0A8D0QM68 38811722
    545 8uep:1H (3.4) BS01 U10 N/A GO:0003954 ... A0A0U1RS44 38811722
    546 8ueq:1B (3.4) BS02 U10 N/A GO:0046872 ... A0A4X1VVS8 38811722
    547 8ueq:1D (3.4) BS01 U10 N/A GO:0051539 ... A0A8D0QM68 38811722
    548 8ueq:1H (3.4) BS01 U10 N/A GO:0003954 ... A0A0U1RS44 38811722
    549 8uer:1B (3.5) BS02 U10 N/A GO:0046872 ... A0A4X1VVS8 38811722
    550 8uer:1H (3.5) BS01 U10 N/A GO:0003954 ... A0A0U1RS44 38811722
    551 8uez:1B (3.5) BS02 U10 N/A GO:0046872 ... A0A4X1VVS8 38811722
    552 8uez:1H (3.5) BS01 U10 N/A GO:0003954 ... A0A0U1RS44 38811722
    553 8ugd:3C (3.5) BS03 U10 N/A GO:0005739 ... Q1HBG9 38811722
    554 8ugd:3C (3.5) BS04 U10 N/A GO:0005739 ... Q1HBG9 38811722
    555 8ugd:3P (3.5) BS03 U10 N/A GO:0005739 ... Q1HBG9 38811722
    556 8ugd:3P (3.5) BS04 U10 N/A GO:0005739 ... Q1HBG9 38811722
    557 8uge:3C (3.5) BS03 U10 N/A GO:0005739 ... Q1HBG9 38811722
    558 8uge:3C (3.5) BS04 U10 N/A GO:0005739 ... Q1HBG9 38811722
    559 8uge:3P (3.5) BS03 U10 N/A GO:0005739 ... Q1HBG9 38811722
    560 8uge:3P (3.5) BS04 U10 N/A GO:0005739 ... Q1HBG9 38811722
    561 8ugf:3C (3.6) BS03 U10 N/A GO:0005739 ... Q1HBG9 38811722
    562 8ugf:3C (3.6) BS04 U10 N/A GO:0005739 ... Q1HBG9 38811722
    563 8ugf:3P (3.6) BS03 U10 N/A GO:0005739 ... Q1HBG9 38811722
    564 8ugf:3P (3.6) BS04 U10 N/A GO:0005739 ... Q1HBG9 38811722
    565 8ugg:3C (3.6) BS03 U10 N/A GO:0005739 ... Q1HBG9 38811722
    566 8ugg:3C (3.6) BS04 U10 N/A GO:0005739 ... Q1HBG9 38811722
    567 8ugg:3P (3.6) BS03 U10 N/A GO:0005739 ... Q1HBG9 38811722
    568 8ugg:3P (3.6) BS04 U10 N/A GO:0005739 ... Q1HBG9 38811722
    569 8xcm:C (3.08) BS04 U10 ? N/A M1V1V5 N/A
    570 8xcn:C (3.02) BS04 U10 ? N/A M1V1V5 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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