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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 570 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1aig:L (2.6) BS05 U10 ? GO:0009772 ... P0C0Y8 9115209
    2 1aig:L (2.6) BS08 U10 ? GO:0009772 ... P0C0Y8 9115209
    3 1aig:M (2.6) BS07 U10 ? GO:0009772 ... P0C0Y9 9115209
    4 1aig:N (2.6) BS05 U10 ? GO:0009772 ... P0C0Y8 9115209
    5 1aig:N (2.6) BS08 U10 ? GO:0009772 ... P0C0Y8 9115209
    6 1aig:O (2.6) BS07 U10 ? GO:0009772 ... P0C0Y9 9115209
    7 1aij:L (2.2) BS05 U10 ? GO:0009772 ... P0C0Y8 9115209
    8 1aij:M (2.2) BS07 U10 ? GO:0009772 ... P0C0Y9 9115209
    9 1aij:R (2.2) BS04 U10 ? GO:0009772 ... P0C0Y8 9115209
    10 1aij:S (2.2) BS07 U10 ? GO:0009772 ... P0C0Y9 9115209
    11 1bcc:C (3.16) BS03 U10 1.10.2.2 GO:0005737 ... P18946 9565029
    12 1ds8:L (2.5) BS05 U10 ? GO:0009772 ... P0C0Y8 10677497
    13 1ds8:M (2.5) BS04 U10 ? GO:0009772 ... P0C0Y9 10677497
    14 1ds8:M (2.5) BS08 U10 ? GO:0009772 ... P0C0Y9 10677497
    15 1ds8:R (2.5) BS05 U10 ? GO:0009772 ... P0C0Y8 10677497
    16 1ds8:S (2.5) BS07 U10 ? GO:0009772 ... P0C0Y9 10677497
    17 1dv3:L (2.5) BS04 U10 ? GO:0009772 ... P0C0Y8 10677497
    18 1dv3:M (2.5) BS07 U10 ? GO:0009772 ... P0C0Y9 10677497
    19 1dv3:R (2.5) BS04 U10 ? GO:0009772 ... P0C0Y8 10677497
    20 1dv3:S (2.5) BS07 U10 ? GO:0009772 ... P0C0Y9 10677497
    21 1dv6:L (2.5) BS03 U10 ? GO:0009772 ... P0C0Y8 10677497
    22 1dv6:M (2.5) BS07 U10 ? GO:0009772 ... P0C0Y9 10677497
    23 1dv6:R (2.5) BS04 U10 ? GO:0009772 ... P0C0Y8 10677497
    24 1dv6:S (2.5) BS07 U10 ? GO:0009772 ... P0C0Y9 10677497
    25 1e14:L (2.7) BS04 U10 ? GO:0009772 ... P0C0Y8 10821666
    26 1e14:L (2.7) BS08 U10 ? GO:0009772 ... P0C0Y8 10821666
    27 1e14:M (2.7) BS07 U10 ? GO:0009772 ... P0C0Y9 10821666
    28 1e6d:L (2.3) BS04 U10 ? GO:0009772 ... P0C0Y8 11042110
    29 1e6d:M (2.3) BS07 U10 ? GO:0009772 ... P0C0Y9 11042110
    30 1f6n:L (2.8) BS05 U10 ? GO:0009772 ... P0C0Y8 11284681
    31 1f6n:L (2.8) BS08 U10 ? GO:0009772 ... P0C0Y8 11284681
    32 1f6n:M (2.8) BS07 U10 ? GO:0009772 ... P0C0Y9 11284681
    33 1fnp:L (2.6) BS04 U10 ? GO:0009772 ... P0C0Y8 11284681
    34 1fnp:M (2.6) BS07 U10 ? GO:0009772 ... P0C0Y9 11284681
    35 1fnq:L (2.6) BS04 U10 ? GO:0009772 ... P0C0Y8 11284681
    36 1fnq:L (2.6) BS08 U10 ? GO:0009772 ... P0C0Y8 11284681
    37 1fnq:M (2.6) BS07 U10 ? GO:0009772 ... P0C0Y9 11284681
    38 1jgw:L (2.8) BS07 U10 ? GO:0009772 ... P0C0Y8 11526320
    39 1jgw:M (2.8) BS07 U10 ? GO:0009772 ... P0C0Y9 11526320
    40 1jgx:M (3.01) BS07 U10 ? GO:0009772 ... P0C0Y9 11526320
    41 1jgy:L (2.7) BS07 U10 ? GO:0009772 ... P0C0Y8 11526320
    42 1jgy:M (2.7) BS07 U10 ? GO:0009772 ... P0C0Y9 11526320
    43 1jgz:L (2.7) BS07 U10 ? GO:0009772 ... P0C0Y8 11526320
    44 1jgz:M (2.7) BS07 U10 ? GO:0009772 ... P0C0Y9 11526320
    45 1jh0:M (3.5) BS07 U10 ? GO:0009772 ... P0C0Y9 11526320
    46 1k6l:L (3.1) BS04 U10 ? GO:0009772 ... P0C0Y8 11993994
    47 1k6l:M (3.1) BS07 U10 ? GO:0009772 ... P0C0Y9 11993994
    48 1k6n:L (3.1) BS04 U10 ? GO:0009772 ... P0C0Y8 11993994
    49 1k6n:M (3.1) BS07 U10 ? GO:0009772 ... P0C0Y9 11993994
    50 1kby:L (2.5) BS07 U10 ? GO:0009772 ... P0C0Y8 16228547
    51 1kby:M (2.5) BS07 U10 ? GO:0009772 ... P0C0Y9 16228547
    52 1l9b:M (2.4) BS07 U10 ? GO:0009772 ... P0C0Y9 12051924
    53 1l9j:M (3.25) BS07 U10 ? GO:0009772 ... P0C0Y9 12051924
    54 1l9j:S (3.25) BS07 U10 ? GO:0009772 ... P0C0Y9 12051924
    55 1m3x:L (2.55) BS05 U10 ? GO:0009772 ... P0C0Y8 12167672
    56 1m3x:M (2.55) BS07 U10 ? GO:0009772 ... P0C0Y9 12167672
    57 1mps:L (2.55) BS05 U10 ? GO:0009772 ... P0C0Y8 9537989
    58 1mps:L (2.55) BS08 U10 ? GO:0009772 ... P0C0Y8 9537989
    59 1mps:M (2.55) BS07 U10 ? GO:0009772 ... P0C0Y9 9537989
    60 1ogv:L (2.35) BS06 U10 ? GO:0009772 ... P0C0Y8 12899837
    61 1ogv:M (2.35) BS06 U10 ? GO:0009772 ... P0C0Y9 12899837
    62 1pcr:L (2.65) BS05 U10 ? GO:0009772 ... P0C0Y8 7866744
    63 1pcr:M (2.65) BS07 U10 ? GO:0009772 ... P0C0Y9 7866744
    64 1pss:L (3.0) BS03 U10 ? GO:0009772 ... P0C0Y8 8161514
    65 1pss:L (3.0) BS08 U10 ? GO:0009772 ... P0C0Y8 8161514
    66 1pss:M (3.0) BS07 U10 ? GO:0009772 ... P0C0Y9 8161514
    67 1pst:L (3.0) BS04 U10 ? GO:0009772 ... P0C0Y8 8161514
    68 1pst:L (3.0) BS08 U10 ? GO:0009772 ... P0C0Y8 8161514
    69 1pst:M (3.0) BS03 U10 ? GO:0009772 ... P0C0Y9 8161514
    70 1pst:M (3.0) BS08 U10 ? GO:0009772 ... P0C0Y9 8161514
    71 1qov:L (2.1) BS03 U10 ? GO:0009772 ... P0C0Y8 10611277
    72 1rg5:L (2.5) BS04 U10 ? GO:0009772 ... P0C0Y8 15130469
    73 1rg5:M (2.5) BS07 U10 ? GO:0009772 ... P0C0Y9 15130469
    74 1rgn:L (2.8) BS04 U10 ? GO:0009772 ... P0C0Y8 15130469
    75 1rgn:L (2.8) BS08 U10 ? GO:0009772 ... P0C0Y8 15130469
    76 1rgn:M (2.8) BS07 U10 ? GO:0009772 ... P0C0Y9 15130469
    77 1rqk:L (2.7) BS04 U10 ? GO:0009772 ... P0C0Y8 15130469
    78 1rqk:M (2.7) BS07 U10 ? GO:0009772 ... P0C0Y9 15130469
    79 1rvj:L (2.75) BS04 U10 ? GO:0009772 ... P0C0Y8 15062092
    80 1rvj:L (2.75) BS08 U10 ? GO:0009772 ... P0C0Y8 15062092
    81 1rvj:M (2.75) BS03 U10 ? GO:0009772 ... P0C0Y9 15062092
    82 1rvj:M (2.75) BS08 U10 ? GO:0009772 ... P0C0Y9 15062092
    83 1ry5:L (2.1) BS05 U10 ? GO:0009772 ... P0C0Y8 15062092
    84 1ry5:L (2.1) BS08 U10 ? GO:0009772 ... P0C0Y8 15062092
    85 1ry5:M (2.1) BS07 U10 ? GO:0009772 ... P0C0Y9 15062092
    86 1rzh:L (1.8) BS04 U10 ? GO:0009772 ... P0C0Y8 15062092
    87 1rzh:L (1.8) BS08 U10 ? GO:0009772 ... P0C0Y8 15062092
    88 1rzh:M (1.8) BS07 U10 ? GO:0009772 ... P0C0Y9 15062092
    89 1rzz:L (2.4) BS04 U10 ? GO:0009772 ... P0C0Y8 15062092
    90 1rzz:M (2.4) BS03 U10 ? GO:0009772 ... P0C0Y9 15062092
    91 1rzz:M (2.4) BS08 U10 ? GO:0009772 ... P0C0Y9 15062092
    92 1rzz:R (2.4) BS03 U10 ? GO:0009772 ... P0C0Y8 15062092
    93 1rzz:S (2.4) BS07 U10 ? GO:0009772 ... P0C0Y9 15062092
    94 1s00:L (2.6) BS05 U10 ? GO:0009772 ... P0C0Y8 15062092
    95 1s00:L (2.6) BS08 U10 ? GO:0009772 ... P0C0Y8 15062092
    96 1s00:M (2.6) BS07 U10 ? GO:0009772 ... P0C0Y9 15062092
    97 1s00:R (2.6) BS03 U10 ? GO:0009772 ... P0C0Y8 15062092
    98 1s00:S (2.6) BS07 U10 ? GO:0009772 ... P0C0Y9 15062092
    99 1umx:M (2.8) BS08 U10 ? GO:0009772 ... P0C0Y9 14741581
    100 1yf6:L (2.25) BS04 U10 ? GO:0009772 ... P0C0Y8 15865437
    101 1yf6:L (2.25) BS05 U10 ? GO:0009772 ... P0C0Y8 15865437
    102 1yf6:M (2.25) BS07 U10 ? GO:0009772 ... P0C0Y9 15865437
    103 1yst:L (3.0) BS04 U10 ? GO:0009772 ... P0C0Y8 15299304
    104 1yst:M (3.0) BS08 U10 ? GO:0009772 ... P0C0Y9 15299304
    105 1z9j:A (4.5) BS04 U10 ? GO:0009772 ... P0C0Y8 15895982
    106 1z9j:A (4.5) BS08 U10 ? GO:0009772 ... P0C0Y8 15895982
    107 1z9j:B (4.5) BS08 U10 ? GO:0009772 ... P0C0Y9 15895982
    108 1z9k:A (4.6) BS04 U10 ? GO:0009772 ... P0C0Y8 15895982
    109 1z9k:B (4.6) BS06 U10 ? GO:0009772 ... P0C0Y9 15895982
    110 2bcc:C (3.5) BS03 U10 1.10.2.2 GO:0005737 ... P18946 9565029
    111 2bnp:B (2.7) BS07 U10 ? GO:0009772 ... P0C0Y9 15937492
    112 2bns:B (2.5) BS07 U10 ? GO:0009772 ... P0C0Y9 15937492
    113 2boz:L (2.4) BS04 U10 ? GO:0009772 ... P0C0Y8 15908429
    114 2boz:L (2.4) BS08 U10 ? GO:0009772 ... P0C0Y8 15908429
    115 2boz:M (2.4) BS08 U10 ? GO:0009772 ... P0C0Y9 15908429
    116 2gmr:L (2.5) BS05 U10 ? GO:0009772 ... P0C0Y8 17105193
    117 2gmr:L (2.5) BS08 U10 ? GO:0009772 ... P0C0Y8 17105193
    118 2gmr:M (2.5) BS07 U10 ? GO:0009772 ... P0C0Y9 17105193
    119 2gnu:L (2.2) BS03 U10 ? GO:0009772 ... P0C0Y8 17005199
    120 2gnu:L (2.2) BS08 U10 ? GO:0009772 ... P0C0Y8 17005199
    121 2gnu:M (2.2) BS07 U10 ? GO:0009772 ... P0C0Y9 17005199
    122 2hg3:L (2.7) BS04 U10 ? GO:0009772 ... P0C0Y8 17315985
    123 2hg3:L (2.7) BS08 U10 ? GO:0009772 ... P0C0Y8 17315985
    124 2hg3:M (2.7) BS07 U10 ? GO:0009772 ... P0C0Y9 17315985
    125 2hg9:L (2.45) BS04 U10 ? GO:0009772 ... P0C0Y8 17315985
    126 2hg9:L (2.45) BS08 U10 ? GO:0009772 ... P0C0Y8 17315985
    127 2hg9:M (2.45) BS07 U10 ? GO:0009772 ... P0C0Y9 17315985
    128 2hh1:L (2.55) BS04 U10 ? GO:0009772 ... P0C0Y8 17315985
    129 2hh1:L (2.55) BS09 U10 ? GO:0009772 ... P0C0Y8 17315985
    130 2hh1:M (2.55) BS08 U10 ? GO:0009772 ... P0C0Y9 17315985
    131 2hhk:L (2.5) BS04 U10 ? GO:0009772 ... P0C0Y8 17315985
    132 2hhk:L (2.5) BS08 U10 ? GO:0009772 ... P0C0Y8 17315985
    133 2hhk:M (2.5) BS07 U10 ? GO:0009772 ... P0C0Y9 17315985
    134 2hit:L (2.75) BS04 U10 ? GO:0009772 ... P0C0Y8 17315985
    135 2hit:L (2.75) BS08 U10 ? GO:0009772 ... P0C0Y8 17315985
    136 2hit:M (2.75) BS07 U10 ? GO:0009772 ... P0C0Y9 17315985
    137 2hj6:L (3.0) BS04 U10 ? GO:0009772 ... P0C0Y8 17315985
    138 2hj6:L (3.0) BS08 U10 ? GO:0009772 ... P0C0Y8 17315985
    139 2hj6:M (3.0) BS07 U10 ? GO:0009772 ... P0C0Y9 17315985
    140 2j8c:L (1.87) BS03 U10 ? GO:0009772 ... P0C0Y8 17570397
    141 2j8c:L (1.87) BS08 U10 ? GO:0009772 ... P0C0Y8 17570397
    142 2j8c:M (1.87) BS07 U10 ? GO:0009772 ... P0C0Y9 17570397
    143 2j8d:L (2.07) BS04 U10 ? GO:0009772 ... P0C0Y8 17570397
    144 2j8d:L (2.07) BS08 U10 ? GO:0009772 ... P0C0Y8 17570397
    145 2j8d:M (2.07) BS07 U10 ? GO:0009772 ... P0C0Y9 17570397
    146 2jiy:L (2.2) BS05 U10 ? GO:0009772 ... P0C0Y8 17711306
    147 2jiy:L (2.2) BS07 U10 ? GO:0009772 ... P0C0Y8 17711306
    148 2jiy:M (2.2) BS07 U10 ? GO:0009772 ... P0C0Y9 17711306
    149 2jj0:L (2.8) BS05 U10 ? GO:0009772 ... P0C0Y8 17711306
    150 2uws:L (2.9) BS08 U10 ? GO:0009772 ... P0C0Y8 17570397
    151 2uws:M (2.9) BS07 U10 ? GO:0009772 ... P0C0Y9 17570397
    152 2uwt:L (2.5) BS08 U10 ? GO:0009772 ... P0C0Y8 17570397
    153 2uwt:M (2.5) BS07 U10 ? GO:0009772 ... P0C0Y9 17570397
    154 2uwu:L (2.04) BS08 U10 ? GO:0009772 ... P0C0Y8 17570397
    155 2uwu:M (2.04) BS07 U10 ? GO:0009772 ... P0C0Y9 17570397
    156 2uwv:L (2.13) BS08 U10 ? GO:0009772 ... P0C0Y8 17570397
    157 2uwv:M (2.13) BS07 U10 ? GO:0009772 ... P0C0Y9 17570397
    158 2uww:L (2.05) BS08 U10 ? GO:0009772 ... P0C0Y8 17570397
    159 2uww:M (2.05) BS07 U10 ? GO:0009772 ... P0C0Y9 17570397
    160 2ux3:L (2.5) BS08 U10 ? GO:0009772 ... P0C0Y8 17570397
    161 2ux3:M (2.5) BS07 U10 ? GO:0009772 ... P0C0Y9 17570397
    162 2ux4:L (2.51) BS08 U10 ? GO:0009772 ... P0C0Y8 17570397
    163 2ux4:M (2.51) BS07 U10 ? GO:0009772 ... P0C0Y9 17570397
    164 2ux5:L (2.21) BS08 U10 ? GO:0009772 ... P0C0Y8 17570397
    165 2ux5:M (2.21) BS07 U10 ? GO:0009772 ... P0C0Y9 17570397
    166 2uxj:L (2.25) BS08 U10 ? GO:0009772 ... P0C0Y8 17570397
    167 2uxj:M (2.25) BS07 U10 ? GO:0009772 ... P0C0Y9 17570397
    168 2uxk:L (2.31) BS08 U10 ? GO:0009772 ... P0C0Y8 17570397
    169 2uxk:M (2.31) BS07 U10 ? GO:0009772 ... P0C0Y9 17570397
    170 2uxl:L (2.88) BS08 U10 ? GO:0009772 ... P0C0Y8 17570397
    171 2uxl:M (2.88) BS07 U10 ? GO:0009772 ... P0C0Y9 17570397
    172 2uxm:L (2.7) BS08 U10 ? GO:0009772 ... P0C0Y8 17570397
    173 2uxm:M (2.7) BS07 U10 ? GO:0009772 ... P0C0Y9 17570397
    174 2wx5:L (2.63) BS07 U10 ? GO:0009772 ... Q3J1A5 20112981
    175 2wx5:M (2.63) BS08 U10 ? GO:0009772 ... Q3J1A6 20112981
    176 3dsy:L (3.0) BS04 U10 ? GO:0009772 ... P0C0Y8 N/A
    177 3dsy:M (3.0) BS07 U10 ? GO:0009772 ... P0C0Y9 N/A
    178 3dta:L (3.2) BS04 U10 ? GO:0009772 ... P0C0Y8 N/A
    179 3dta:M (3.2) BS07 U10 ? GO:0009772 ... P0C0Y9 N/A
    180 3dtr:L (3.1) BS04 U10 ? GO:0009772 ... P0C0Y8 N/A
    181 3dtr:M (3.1) BS07 U10 ? GO:0009772 ... P0C0Y9 N/A
    182 3dts:L (3.1) BS03 U10 ? GO:0009772 ... P0C0Y8 N/A
    183 3dts:M (3.1) BS07 U10 ? GO:0009772 ... P0C0Y9 N/A
    184 3du2:L (3.1) BS04 U10 ? GO:0009772 ... P0C0Y8 N/A
    185 3du2:M (3.1) BS07 U10 ? GO:0009772 ... P0C0Y9 N/A
    186 3du3:L (2.8) BS04 U10 ? GO:0009772 ... P0C0Y8 N/A
    187 3du3:M (2.8) BS07 U10 ? GO:0009772 ... P0C0Y9 N/A
    188 3duq:L (2.7) BS04 U10 ? GO:0009772 ... P0C0Y8 N/A
    189 3duq:M (2.7) BS07 U10 ? GO:0009772 ... P0C0Y9 N/A
    190 3i4d:L (2.01) BS04 U10 ? GO:0009772 ... P0C0Y8 N/A
    191 3i4d:M (2.01) BS03 U10 ? GO:0009772 ... P0C0Y9 N/A
    192 3i4d:M (2.01) BS09 U10 ? GO:0009772 ... P0C0Y9 N/A
    193 3kp9:A (3.6) BS01 U10 1.17.4.- GO:0016020 ... Q2JJF6 20110994
    194 3v3y:L (2.8) BS03 U10 ? GO:0009772 ... P0C0Y8 22365928
    195 3v3y:L (2.8) BS08 U10 ? GO:0009772 ... P0C0Y8 22365928
    196 3v3y:M (2.8) BS07 U10 ? GO:0009772 ... P0C0Y9 22365928
    197 3v3z:L (2.9) BS05 U10 ? GO:0009772 ... P0C0Y8 22365928
    198 3v3z:M (2.9) BS07 U10 ? GO:0009772 ... P0C0Y9 22365928
    199 3zum:L (2.5) BS04 U10 ? GO:0009772 ... P0C0Y8 21970763
    200 3zum:L (2.5) BS08 U10 ? GO:0009772 ... P0C0Y8 21970763
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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