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BioLiP
Download all results in tab-seperated text for 18 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1a9m:A (2.3) BS01 U0E 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03366 9450540 PDBbind: -logKd/Ki=6.92, Ki=119nM
    2 1a9m:B (2.3) BS01 U0E 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03366 9450540 MOAD: Ki=119nM
    PDBbind: -logKd/Ki=6.92, Ki=119nM
    3 1axa:A (2.0) BS01 U0E 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03366 9521105
    4 1axa:A (2.0) BS02 U0E 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03366 9521105
    5 1axa:B (2.0) BS01 U0E 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03366 9521105
    6 1axa:B (2.0) BS02 U0E 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03366 9521105
    7 1gnm:A (2.3) BS01 U0E 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03366 8718851 MOAD: Ki=560nM
    PDBbind: -logKd/Ki=6.25, Ki=560nM
    8 1gnm:A (2.3) BS02 U0E 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03366 8718851 MOAD: Ki=560nM
    PDBbind: -logKd/Ki=6.25, Ki=560nM
    9 1gnm:B (2.3) BS01 U0E 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03366 8718851 PDBbind: -logKd/Ki=6.25, Ki=560nM
    10 1gnm:B (2.3) BS02 U0E 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03366 8718851 PDBbind: -logKd/Ki=6.25, Ki=560nM
    11 1gnn:A (2.3) BS01 U0E 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03366 8718851 MOAD: Ki=2100nM
    PDBbind: -logKd/Ki=5.68, Ki=2100nM
    12 1gnn:A (2.3) BS02 U0E 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03366 8718851 MOAD: Ki=2100nM
    PDBbind: -logKd/Ki=5.68, Ki=2100nM
    13 1gnn:B (2.3) BS01 U0E 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03366 8718851 PDBbind: -logKd/Ki=5.68, Ki=2100nM
    14 1gnn:B (2.3) BS02 U0E 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03366 8718851 PDBbind: -logKd/Ki=5.68, Ki=2100nM
    15 1gno:A (2.3) BS01 U0E 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03366 8718851 PDBbind: -logKd/Ki=7.70, Ki=20nM
    16 1gno:A (2.3) BS02 U0E 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03366 8718851 PDBbind: -logKd/Ki=7.70, Ki=20nM
    17 1gno:B (2.3) BS01 U0E 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03366 8718851 MOAD: Ki=20nM
    PDBbind: -logKd/Ki=7.70, Ki=20nM
    18 1gno:B (2.3) BS02 U0E 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03366 8718851 MOAD: Ki=20nM
    PDBbind: -logKd/Ki=7.70, Ki=20nM
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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