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BioLiP
Download all results in tab-seperated text for 244 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    201 6pz0:B (1.8) BS02 TYR 1.21.1.1 GO:0006570 ... B9K712 34748729
    202 6pz0:B (1.8) BS04 TYR 1.21.1.1 GO:0006570 ... B9K712 34748729
    203 6u60:A (2.1) BS01 TYR 1.3.1.12 GO:0000166 ... Q81P63 31750992
    204 6u60:A (2.1) BS02 TYR 1.3.1.12 GO:0000166 ... Q81P63 31750992
    205 6u60:B (2.1) BS01 TYR 1.3.1.12 GO:0000166 ... Q81P63 31750992
    206 6u60:B (2.1) BS02 TYR 1.3.1.12 GO:0000166 ... Q81P63 31750992
    207 6wjo:A (1.693) BS01 TYR ? GO:0003700 ... D9QA55 32156582
    208 6wjo:B (1.693) BS01 TYR ? GO:0003700 ... D9QA55 32156582
    209 6yjy:A (1.67) BS03 TYR 2.3.2.5 GO:0005515 ... Q16769 32551535
    210 6yjy:B (1.67) BS04 TYR 2.3.2.5 GO:0005515 ... Q16769 32551535
    211 6yjy:B (1.67) BS06 TYR 2.3.2.5 GO:0005515 ... Q16769 32551535
    212 6yu7:A (2.3) BS01 TYR ? GO:0016020 ... Q9KDT3 33155685
    213 7c3l:A (1.8) BS02 TYR 1.4.3.14 GO:0016491 ... A0A0G4DCU0 32894626
    214 7c3l:B (1.8) BS02 TYR 1.4.3.14 GO:0016491 ... A0A0G4DCU0 32894626
    215 7dkb:A (2.03) BS02 TYR 3.4.14.- GO:0008239 ... B4SLK2 33846449
    216 7dkb:B (2.03) BS02 TYR 3.4.14.- GO:0008239 ... B4SLK2 33846449
    217 7dkc:A (1.86) BS01 TYR 3.4.14.- GO:0008239 ... B4SLK2 33846449
    218 7dkc:A (1.86) BS02 TYR 3.4.14.- GO:0008239 ... B4SLK2 33846449
    219 7dkc:B (1.86) BS01 TYR 3.4.14.- GO:0008239 ... B4SLK2 33846449
    220 7dkc:B (1.86) BS02 TYR 3.4.14.- GO:0008239 ... B4SLK2 33846449
    221 7dkd:A (1.92) BS02 TYR 3.4.14.- GO:0008239 ... B4SLK2 33846449
    222 7dkd:B (1.92) BS02 TYR 3.4.14.- GO:0008239 ... B4SLK2 33846449
    223 7dke:A (1.91) BS02 TYR 3.4.14.- GO:0008239 ... B4SLK2 33846449
    224 7dke:B (1.91) BS02 TYR 3.4.14.- GO:0008239 ... B4SLK2 33846449
    225 7kqr:A (1.89) BS02 TYR N/A N/A N/A 33734681
    226 7kqr:B (1.89) BS02 TYR N/A N/A N/A 33734681
    227 7pd1:A (1.27) BS03 TYR ? GO:0003824 ... A1HPQ5 35477710
    228 7pd1:B (1.27) BS03 TYR ? GO:0003824 ... A1HPQ5 35477710
    229 7qi1:C (1.76) BS02 TYR ? N/A S7N159 35739107
    230 7reu:A (2.79) BS01 TYR 2.5.1.54 GO:0003849 ... A0A2H0ZNV2 N/A
    231 7reu:A (2.79) BS02 TYR 2.5.1.54 GO:0003849 ... A0A2H0ZNV2 N/A
    232 7reu:B (2.79) BS01 TYR 2.5.1.54 GO:0003849 ... A0A2H0ZNV2 N/A
    233 7reu:B (2.79) BS02 TYR 2.5.1.54 GO:0003849 ... A0A2H0ZNV2 N/A
    234 7rs3:B (1.84) BS01 TYR ? N/A P03372 34452998
    235 7rs3:C (1.84) BS01 TYR ? N/A P03372 34452998
    236 7ux8:A (1.4) BS02 TYR ? GO:0008168 ... A0A0D4WTP2 36173166
    237 7ux8:A (1.4) BS03 TYR ? GO:0008168 ... A0A0D4WTP2 36173166
    238 7ux8:B (1.4) BS01 TYR ? GO:0008168 ... A0A0D4WTP2 36173166
    239 7ux8:B (1.4) BS03 TYR ? GO:0008168 ... A0A0D4WTP2 36173166
    240 7vys:r (2.5) BS03 TYR 7.1.1.2 GO:0003954 ... O79881 35145322
    241 8day:A (2.55) BS01 TYR 2.5.1.- GO:0009820 ... S0EH60 36084241
    242 8grt:A (2.59) BS02 TYR 3.4.14.- GO:0008239 ... B4SLK2 N/A
    243 8grt:B (2.59) BS02 TYR 3.4.14.- GO:0008239 ... B4SLK2 N/A
    244 8ida:B (3.2) BS01 TYR N/A GO:0002720 ... Q01650 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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