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BioLiP
Download all results in tab-seperated text for 11 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 2dpz:A (2.1) BS01 TYL 3.1.1.4 GO:0004623 ... P59071 N/A
    2 2ocu:A (2.38) BS03 TYL 3.4.21.- GO:0005576 ... P24627 N/A
    3 3py4:A (2.42) BS03 TYL 1.11.1.7 GO:0004601 ... P80025 N/A
    4 4a9j:A (1.9) BS01 TYL ? N/A P25440 22136404
    5 4a9j:B (1.9) BS01 TYL ? N/A P25440 22136404
    6 4a9j:C (1.9) BS01 TYL ? N/A P25440 22136404
    7 4a9k:A (1.81) BS01 TYL 2.3.1.-
    2.3.1.48    		 GO:0004402 ... Q92793 22136404
    8 4a9k:B (1.81) BS01 TYL 2.3.1.-
    2.3.1.48    		 GO:0004402 ... Q92793 22136404
    9 4cut:A (1.835) BS01 TYL ? N/A Q9UIF8 N/A
    10 4yji:A (1.73) BS01 TYL 3.5.1.13 GO:0003824 ... C3UWD1 26454172
    11 5pbe:A (1.835) BS01 TYL ? N/A Q9UIF8 28436492
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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