Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 106 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 1 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1oiz:A (1.88) BS01 TRT ? GO:0001890 ... P49638 12899840
    2 1oiz:A (1.88) BS02 TRT ? GO:0001890 ... P49638 12899840
    3 1oiz:A (1.88) BS03 TRT ? GO:0001890 ... P49638 12899840
    4 1oiz:A (1.88) BS04 TRT ? GO:0001890 ... P49638 12899840
    5 1oiz:B (1.88) BS01 TRT ? GO:0001890 ... P49638 12899840
    6 1oiz:B (1.88) BS02 TRT ? GO:0001890 ... P49638 12899840
    7 1oiz:B (1.88) BS03 TRT ? GO:0001890 ... P49638 12899840
    8 1oiz:B (1.88) BS04 TRT ? GO:0001890 ... P49638 12899840
    9 1oiz:B (1.88) BS05 TRT ? GO:0001890 ... P49638 12899840
    10 2i0u:A (2.2) BS02 TRT 3.1.1.4 GO:0004623 ... Q1RP79 N/A
    11 2i0u:E (2.2) BS02 TRT 3.1.1.4 GO:0004623 ... Q1RP79 N/A
    12 3iiq:B (2.0) BS03 TRT 3.4.21.89 GO:0004252 ... P00803 19655811
    13 4g6g:A (2.39) BS01 TRT 1.6.5.9 GO:0003954 ... P32340 23086143
    14 4g6g:A (2.39) BS02 TRT 1.6.5.9 GO:0003954 ... P32340 23086143
    15 4g6g:A (2.39) BS08 TRT 1.6.5.9 GO:0003954 ... P32340 23086143
    16 4g6g:B (2.39) BS01 TRT 1.6.5.9 GO:0003954 ... P32340 23086143
    17 4g6g:B (2.39) BS02 TRT 1.6.5.9 GO:0003954 ... P32340 23086143
    18 4g6g:B (2.39) BS03 TRT 1.6.5.9 GO:0003954 ... P32340 23086143
    19 4g74:A (2.48) BS03 TRT 1.6.5.9 GO:0003954 ... P32340 23086143
    20 4g74:A (2.48) BS04 TRT 1.6.5.9 GO:0003954 ... P32340 23086143
    21 4g74:B (2.48) BS03 TRT 1.6.5.9 GO:0003954 ... P32340 23086143
    22 5jwa:A (2.162) BS06 TRT 1.6.5.9 GO:0000166 ... Q8I302 28195463
    23 5jwa:A (2.162) BS07 TRT 1.6.5.9 GO:0000166 ... Q8I302 28195463
    24 5jwa:A (2.162) BS08 TRT 1.6.5.9 GO:0000166 ... Q8I302 28195463
    25 5jwa:H (2.162) BS01 TRT 1.6.5.9 GO:0000166 ... Q8I302 28195463
    26 5jwa:H (2.162) BS07 TRT 1.6.5.9 GO:0000166 ... Q8I302 28195463
    27 5jwa:H (2.162) BS08 TRT 1.6.5.9 GO:0000166 ... Q8I302 28195463
    28 5jwb:A (2.7) BS06 TRT 1.6.5.9 GO:0000166 ... Q8I302 28195463
    29 5jwb:A (2.7) BS07 TRT 1.6.5.9 GO:0000166 ... Q8I302 28195463
    30 5jwb:A (2.7) BS09 TRT 1.6.5.9 GO:0000166 ... Q8I302 28195463
    31 5jwb:H (2.7) BS01 TRT 1.6.5.9 GO:0000166 ... Q8I302 28195463
    32 5jwb:H (2.7) BS08 TRT 1.6.5.9 GO:0000166 ... Q8I302 28195463
    33 5jwb:H (2.7) BS09 TRT 1.6.5.9 GO:0000166 ... Q8I302 28195463
    34 5jwc:A (2.051) BS06 TRT 1.6.5.9 GO:0000166 ... Q8I302 28195463
    35 5jwc:A (2.051) BS07 TRT 1.6.5.9 GO:0000166 ... Q8I302 28195463
    36 5jwc:A (2.051) BS11 TRT 1.6.5.9 GO:0000166 ... Q8I302 28195463
    37 5jwc:H (2.051) BS01 TRT 1.6.5.9 GO:0000166 ... Q8I302 28195463
    38 5jwc:H (2.051) BS09 TRT 1.6.5.9 GO:0000166 ... Q8I302 28195463
    39 5mif:C (2.141) BS01 TRT ? GO:0016787 ... D5GA36 28794466
    40 5mif:D (2.141) BS01 TRT ? GO:0016787 ... D5GA36 28794466
    41 6dxz:A (2.7) BS01 TRT 3.5.1.23
    3.5.1.60    		 N/A G1T7U7 30301806
    42 6dxz:A (2.7) BS02 TRT 3.5.1.23
    3.5.1.60    		 N/A G1T7U7 30301806
    43 6dxz:B (2.7) BS01 TRT 3.5.1.23
    3.5.1.60    		 N/A G1T7U7 30301806
    44 6mt7:A (1.78) BS01 TRT ? GO:0005549 ... Q06KA2 30926880
    45 6mt7:B (1.78) BS01 TRT ? GO:0005549 ... Q06KA2 30926880
    46 6mtf:A (1.92) BS01 TRT ? GO:0005549 ... Q06KA2 30926880
    47 6mtf:B (1.92) BS01 TRT ? GO:0005549 ... Q06KA2 30926880
    48 6tdu:AB (4.32) BS03 TRT N/A GO:0005524 ... N/A 31738165
    49 6tdu:AE (4.32) BS01 TRT N/A GO:0005524 ... N/A 31738165
    50 6tdu:BE (4.32) BS01 TRT N/A GO:0005524 ... N/A 31738165
    51 6tdu:G (4.32) BS01 TRT N/A N/A N/A 31738165
    52 6tdu:I (4.32) BS01 TRT N/A N/A N/A 31738165
    53 6tdu:M (4.32) BS01 TRT N/A N/A N/A 31738165
    54 6tdu:N (4.32) BS01 TRT N/A N/A N/A 31738165
    55 6tdu:P (4.32) BS01 TRT N/A N/A N/A 31738165
    56 6tdu:g (4.32) BS01 TRT N/A N/A N/A 31738165
    57 6tdu:i (4.32) BS01 TRT N/A N/A N/A 31738165
    58 6tdu:m (4.32) BS01 TRT N/A N/A N/A 31738165
    59 6tdu:n (4.32) BS01 TRT N/A N/A N/A 31738165
    60 6tdu:p (4.32) BS01 TRT N/A N/A N/A 31738165
    61 6tdv:M (2.8) BS01 TRT N/A N/A N/A 31738165
    62 6tdv:N (2.8) BS01 TRT N/A N/A N/A 31738165
    63 6tdv:P (2.8) BS01 TRT N/A N/A N/A 31738165
    64 6tdv:m (2.8) BS01 TRT N/A N/A N/A 31738165
    65 6tdv:n (2.8) BS01 TRT N/A N/A N/A 31738165
    66 6tdv:p (2.8) BS01 TRT N/A N/A N/A 31738165
    67 6tdy:B (3.04) BS03 TRT N/A GO:0005524 ... N/A 31738165
    68 6tdy:E (3.04) BS01 TRT N/A GO:0005524 ... N/A 31738165
    69 6tdz:F (3.14) BS01 TRT N/A GO:0005524 ... N/A 31738165
    70 6te0:D (3.92) BS01 TRT N/A GO:0005524 ... N/A 31738165
    71 6ztk:A (1.55) BS01 TRT ? GO:0004869 ... V5H924 34065290
    72 6ztk:B (1.55) BS01 TRT ? GO:0004869 ... V5H924 34065290
    73 7pzi:A (2.9) BS01 TRT ? GO:0003677 ... P03146 34834922
    74 7pzi:B (2.9) BS01 TRT ? GO:0003677 ... P03146 34834922
    75 7pzi:B (2.9) BS02 TRT ? GO:0003677 ... P03146 34834922
    76 7pzi:C (2.9) BS01 TRT ? GO:0003677 ... P03146 34834922
    77 7pzi:D (2.9) BS01 TRT ? GO:0003677 ... P03146 34834922
    78 7pzk:A (3.1) BS01 TRT ? GO:0003677 ... P03146 34834922
    79 7pzk:A (3.1) BS02 TRT ? GO:0003677 ... P03146 34834922
    80 7pzk:B (3.1) BS01 TRT ? GO:0003677 ... P03146 34834922
    81 7pzk:C (3.1) BS01 TRT ? GO:0003677 ... P03146 34834922
    82 7pzk:C (3.1) BS02 TRT ? GO:0003677 ... P03146 34834922
    83 7pzk:D (3.1) BS01 TRT ? GO:0003677 ... P03146 34834922
    84 7pzl:A (2.8) BS01 TRT ? GO:0003677 ... P03146 34834922
    85 7pzl:A (2.8) BS02 TRT ? GO:0003677 ... P03146 34834922
    86 7pzl:B (2.8) BS01 TRT ? GO:0003677 ... P03146 34834922
    87 7pzl:C (2.8) BS01 TRT ? GO:0003677 ... P03146 34834922
    88 7pzl:C (2.8) BS02 TRT ? GO:0003677 ... P03146 34834922
    89 7pzl:D (2.8) BS01 TRT ? GO:0003677 ... P03146 34834922
    90 7pzl:D (2.8) BS02 TRT ? GO:0003677 ... P03146 34834922
    91 7pzm:A (2.9) BS01 TRT ? GO:0003677 ... P03146 34834922
    92 7pzm:B (2.9) BS01 TRT ? GO:0003677 ... P03146 34834922
    93 7pzm:B (2.9) BS02 TRT ? GO:0003677 ... P03146 34834922
    94 7pzm:C (2.9) BS01 TRT ? GO:0003677 ... P03146 34834922
    95 7pzm:D (2.9) BS01 TRT ? GO:0003677 ... P03146 34834922
    96 7pzn:A (3.2) BS01 TRT ? GO:0003677 ... P03146 34834922
    97 7pzn:B (3.2) BS01 TRT ? GO:0003677 ... P03146 34834922
    98 7pzn:B (3.2) BS02 TRT ? GO:0003677 ... P03146 34834922
    99 7pzn:C (3.2) BS02 TRT ? GO:0003677 ... P03146 34834922
    100 7pzn:C (3.2) BS03 TRT ? GO:0003677 ... P03146 34834922
    101 7pzn:D (3.2) BS02 TRT ? GO:0003677 ... P03146 34834922
    102 7pzn:D (3.2) BS03 TRT ? GO:0003677 ... P03146 34834922
    103 8af2:A (2.51) BS01 TRT 1.1.1.n12
    4.2.1.107
    4.2.1.119    		 N/A P51659 38505507
    104 8af2:A (2.51) BS02 TRT 1.1.1.n12
    4.2.1.107
    4.2.1.119    		 N/A P51659 38505507
    105 8af2:B (2.51) BS01 TRT 1.1.1.n12
    4.2.1.107
    4.2.1.119    		 N/A P51659 38505507
    106 8af3:A (1.52) BS01 TRT 1.1.1.n12
    4.2.1.107
    4.2.1.119    		 N/A P51659 38505507
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218