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BioLiP
Download all results in tab-seperated text for 29 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1g4s:A (1.7) BS02 TPS 2.5.1.3 GO:0000287 ... P39594 11513589
    2 1g4s:B (1.7) BS02 TPS 2.5.1.3 GO:0000287 ... P39594 11513589
    3 2qry:A (2.25) BS01 TPS ? GO:0015888 ... P31550 18177053 MOAD: Kd=2.3nM
    PDBbind: -logKd/Ki=8.64, Kd=2.3nM
    BindingDB: Kd=2.3nM
    4 2qry:B (2.25) BS01 TPS ? GO:0015888 ... P31550 18177053 MOAD: Kd=2.3nM
    BindingDB: Kd=2.3nM
    5 2qry:C (2.25) BS01 TPS ? GO:0015888 ... P31550 18177053 MOAD: Kd=2.3nM
    BindingDB: Kd=2.3nM
    6 2qry:D (2.25) BS01 TPS ? GO:0015888 ... P31550 18177053 MOAD: Kd=2.3nM
    BindingDB: Kd=2.3nM
    7 2tps:A (1.25) BS02 TPS 2.5.1.3 GO:0000287 ... P39594 10350464
    8 2tps:B (1.25) BS02 TPS 2.5.1.3 GO:0000287 ... P39594 10350464
    9 2y6z:A (2.6) BS01 TPS 5.3.1.1 GO:0004807 ... P04789 22226942
    10 3c9t:A (2.6) BS04 TPS 2.7.4.16 GO:0000287 ... O67883 18311927
    11 3c9t:B (2.6) BS06 TPS 2.7.4.16 GO:0000287 ... O67883 18311927
    12 3nl3:A (3.007) BS01 TPS 2.5.1.3
    2.7.1.50    		 GO:0000287 ... Q6FV03 20968298
    13 3nl3:B (3.007) BS01 TPS 2.5.1.3
    2.7.1.50    		 GO:0000287 ... Q6FV03 20968298
    14 3nl3:C (3.007) BS01 TPS 2.5.1.3
    2.7.1.50    		 GO:0000287 ... Q6FV03 20968298
    15 3nl3:D (3.007) BS01 TPS 2.5.1.3
    2.7.1.50    		 GO:0000287 ... Q6FV03 20968298
    16 3nl3:E (3.007) BS01 TPS 2.5.1.3
    2.7.1.50    		 GO:0000287 ... Q6FV03 20968298
    17 3nl3:F (3.007) BS01 TPS 2.5.1.3
    2.7.1.50    		 GO:0000287 ... Q6FV03 20968298
    18 3nl6:A (2.612) BS01 TPS 2.5.1.3
    2.7.1.50    		 GO:0000287 ... Q6FV03 20968298
    19 3nl6:B (2.612) BS01 TPS 2.5.1.3
    2.7.1.50    		 GO:0000287 ... Q6FV03 20968298
    20 3nl6:C (2.612) BS01 TPS 2.5.1.3
    2.7.1.50    		 GO:0000287 ... Q6FV03 20968298
    21 3nm3:A (3.102) BS02 TPS 2.5.1.3
    2.7.1.50    		 GO:0000287 ... Q6FV03 20968298
    22 3nm3:B (3.102) BS02 TPS 2.5.1.3
    2.7.1.50    		 GO:0000287 ... Q6FV03 20968298
    23 3nm3:C (3.102) BS02 TPS 2.5.1.3
    2.7.1.50    		 GO:0000287 ... Q6FV03 20968298
    24 3nm3:D (3.102) BS02 TPS 2.5.1.3
    2.7.1.50    		 GO:0000287 ... Q6FV03 20968298
    25 3nm3:E (3.102) BS02 TPS 2.5.1.3
    2.7.1.50    		 GO:0000287 ... Q6FV03 20968298
    26 3nm3:F (3.102) BS02 TPS 2.5.1.3
    2.7.1.50    		 GO:0000287 ... Q6FV03 20968298
    27 5dd7:A (1.7) BS02 TPS 2.7.4.16 GO:0000287 ... A0A0D5YC82 30867460
    28 5dd7:B (1.7) BS02 TPS 2.7.4.16 GO:0000287 ... A0A0D5YC82 30867460
    29 8yku:A (2.17) BS07 TPS N/A N/A A0A232BM78 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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