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BioLiP
Download all results in tab-seperated text for 23 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 2ihu:A (2.05) BS02 TP9 2.5.1.66 GO:0000287 ... Q9LCV9 19477162
    2 2ihu:A (2.05) BS03 TP9 2.5.1.66 GO:0000287 ... Q9LCV9 19477162
    3 2ihu:B (2.05) BS01 TP9 2.5.1.66 GO:0000287 ... Q9LCV9 19477162
    4 2ihu:B (2.05) BS03 TP9 2.5.1.66 GO:0000287 ... Q9LCV9 19477162
    5 2ihu:C (2.05) BS03 TP9 2.5.1.66 GO:0000287 ... Q9LCV9 19477162
    6 2ihu:D (2.05) BS03 TP9 2.5.1.66 GO:0000287 ... Q9LCV9 19477162
    7 5k2o:A (2.873) BS04 TP9 2.2.1.6 GO:0000287 ... P17597 28137884
    8 5k3s:A (2.873) BS04 TP9 2.2.1.6 GO:0000287 ... P17597 28137884
    9 5wj1:A (2.522) BS04 TP9 2.2.1.6 GO:0000287 ... P17597 29440497
    10 5wkc:A (2.334) BS07 TP9 2.2.1.6 GO:0000287 ... P07342 29440497
    11 5wkc:B (2.334) BS04 TP9 2.2.1.6 GO:0000287 ... P07342 29440497
    12 5wkc:B (2.334) BS07 TP9 2.2.1.6 GO:0000287 ... P07342 29440497
    13 5wkc:D (2.334) BS06 TP9 2.2.1.6 GO:0000287 ... P07342 29440497
    14 5wkc:E (2.334) BS02 TP9 2.2.1.6 GO:0000287 ... P07342 29440497
    15 5wkc:E (2.334) BS06 TP9 2.2.1.6 GO:0000287 ... P07342 29440497
    16 6del:A (2.119) BS04 TP9 2.2.1.6 GO:0000166 ... A0A1D8PJF9 30249642
    17 6dem:A (2.038) BS03 TP9 2.2.1.6 GO:0000166 ... A0A1D8PJF9 30249642
    18 6den:A (1.806) BS04 TP9 2.2.1.6 GO:0000166 ... A0A1D8PJF9 30249642
    19 6deo:A (1.971) BS03 TP9 2.2.1.6 GO:0000166 ... A0A1D8PJF9 30249642
    20 6dep:A (2.149) BS05 TP9 2.2.1.6 GO:0000166 ... A0A1D8PJF9 30249642
    21 6deq:A (2.127) BS04 TP9 2.2.1.6 GO:0000166 ... A0A1D8PJF9 30249642
    22 6der:A (2.126) BS05 TP9 2.2.1.6 GO:0000166 ... A0A1D8PJF9 30249642
    23 7u1d:A (3.11) BS04 TP9 2.2.1.6 GO:0000287 ... P17597 35690625
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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