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BioLiP
Download all results in tab-seperated text for 22 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 2a3a:A (2.1) BS01 TEP 3.2.1.14 GO:0004553 ... Q873X9 16183021 MOAD: ic50=1500uM
    PDBbind: -logKd/Ki=2.82, IC50=1500uM
    BindingDB: IC50=1500000nM
    2 2a3a:A (2.1) BS02 TEP 3.2.1.14 GO:0004553 ... Q873X9 16183021 MOAD: ic50=1500uM
    PDBbind: -logKd/Ki=2.82, IC50=1500uM
    BindingDB: IC50=1500000nM
    3 2a3a:A (2.1) BS03 TEP 3.2.1.14 GO:0004553 ... Q873X9 16183021 MOAD: ic50=1500uM
    PDBbind: -logKd/Ki=2.82, IC50=1500uM
    BindingDB: IC50=1500000nM
    4 2a3a:B (2.1) BS01 TEP 3.2.1.14 GO:0004553 ... Q873X9 16183021 MOAD: ic50=1500uM
    BindingDB: IC50=1500000nM
    5 2a3a:B (2.1) BS02 TEP 3.2.1.14 GO:0004553 ... Q873X9 16183021 MOAD: ic50=1500uM
    BindingDB: IC50=1500000nM
    6 3rox:A (2.4) BS01 TEP 5.1.99.6 GO:0000166 ... Q8K4Z3 22940582
    7 4eoh:A (2.1) BS01 TEP 2.7.1.35 GO:0000287 ... O00764 22879864 MOAD: Ki=50uM
    PDBbind: -logKd/Ki=4.30, Ki=50uM
    8 4eoh:B (2.1) BS01 TEP 2.7.1.35 GO:0000287 ... O00764 22879864 MOAD: Ki=50uM
    9 5mzj:A (2.0) BS01 TEP ? GO:0001609 ... P0ABE7
    P29274    		 28712806
    10 6ico:A (1.85) BS03 TEP 1.14.13.178 GO:0005737 ... H9N289 31412262
    11 6ico:B (1.85) BS03 TEP 1.14.13.178 GO:0005737 ... H9N289 31412262
    12 6ico:C (1.85) BS03 TEP 1.14.13.178 GO:0005737 ... H9N289 31412262
    13 6tuz:A (1.24) BS01 TEP 3.1.1.98 GO:0016787 ... Q6P988 33033363 MOAD: Kd=6.8mM
    14 7vrk:A (2.48) BS01 TEP ? N/A P25440 37432115
    15 7vrk:B (2.48) BS01 TEP ? N/A P25440 37432115
    16 7vrk:C (2.48) BS01 TEP ? N/A P25440 37432115
    17 7vrm:A (1.1) BS01 TEP ? N/A P25440 37432115
    18 8a2o:A (3.45) BS01 TEP ? GO:0001609 ... P0ABE7
    P29274    		 37791355
    19 8ck7:A (2.2) BS01 TEP ? GO:0005576 ... P02701 37318226
    20 8ck7:B (2.2) BS01 TEP ? GO:0005576 ... P02701 37318226
    21 8pwn:A (2.4) BS01 TEP ? GO:0001609 ... P0ABE7
    P29274    		 37828292
    22 9grq:A (1.85) BS01 TEP N/A N/A P0DTD1 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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