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BioLiP
Download all results in tab-seperated text for 6 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 2qm9:A (2.31) BS01 TDZ ? GO:0005324 ... P04117 17761196 MOAD: Kd=17nM
    PDBbind: -logKd/Ki=7.77, Kd=17nM
    2 2qm9:B (2.31) BS01 TDZ ? GO:0005324 ... P04117 17761196 MOAD: Kd=17nM
    PDBbind: -logKd/Ki=7.77, Kd=17nM
    3 2vn0:A (2.7) BS02 TDZ 1.14.14.1 GO:0002933 ... P10632 18413310
    4 6hn8:A (1.997) BS02 TDZ 1.14.14.1
    1.6.2.4    		 GO:0004497 ... P14779 N/A
    5 6hn8:B (1.997) BS02 TDZ 1.14.14.1
    1.6.2.4    		 GO:0004497 ... P14779 N/A
    6 7m23:A (1.3) BS02 TDZ 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 34070212
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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