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BioLiP
Download all results in tab-seperated text for 10 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1qll:A (2.04) BS01 TDA 3.1.1.4 GO:0004623 ... P82287 11141053
    2 1qll:B (2.04) BS01 TDA 3.1.1.4 GO:0004623 ... P82287 11141053
    3 1tc8:A (2.7) BS02 TDA 3.1.1.4 GO:0004623 ... Q6SLM2 15659372
    4 1tp2:A (2.4) BS01 TDA 3.1.1.4 GO:0004623 ... P59071 N/A
    5 1tp2:B (2.4) BS01 TDA 3.1.1.4 GO:0004623 ... P59071 N/A
    6 4xu6:A (1.898) BS01 TDA ? GO:0008289 ... A1T557 26160948
    7 4xu6:A (1.898) BS02 TDA ? GO:0008289 ... A1T557 26160948
    8 6ghh:A (1.9) BS01 TDA ? GO:0005515 ... P02754 29879410 MOAD: Kd=0.000000064M
    PDBbind: -logKd/Ki=6.71, Kd=0.193uM
    9 7a9y:AAA (1.64) BS01 TDA ? GO:0001972 ... P29762 33559606
    10 7fg1:A (0.93) BS01 TDA ? GO:0005515 ... P05413 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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