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BioLiP
Download all results in tab-seperated text for 20 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 5fbh:A (2.7) BS03 TCR ? GO:0004930 ... P41180 27386547
    2 5fbh:B (2.7) BS03 TCR ? GO:0004930 ... P41180 27386547
    3 5fbk:A (2.1) BS01 TCR ? GO:0004930 ... P41180 27386547
    4 5fbk:B (2.1) BS01 TCR ? GO:0004930 ... P41180 27386547
    5 7e6t:A (3.0) BS03 TCR ? GO:0004930 ... P41180 34467854
    6 7e6t:B (3.0) BS03 TCR ? GO:0004930 ... P41180 34467854
    7 7sil:A (2.7) BS01 TCR ? GO:0004930 ... P41180 34916296
    8 7sil:B (2.7) BS02 TCR ? GO:0004930 ... P41180 34916296
    9 7sim:A (2.7) BS01 TCR ? GO:0004930 ... P41180 34916296
    10 7sim:B (2.7) BS02 TCR ? GO:0004930 ... P41180 34916296
    11 9asb:Q (3.4) BS01 TCR ? GO:0004930 ... P41180 38632411
    12 9asb:R (3.4) BS01 TCR ? GO:0004930 ... P41180 38632411
    13 9avg:Q (3.6) BS01 TCR ? GO:0004930 ... P41180 38632411
    14 9avg:R (3.6) BS02 TCR ? GO:0004930 ... P41180 38632411
    15 9avl:Q (3.8) BS01 TCR ? GO:0004930 ... P41180 38632411
    16 9avl:R (3.8) BS01 TCR ? GO:0004930 ... P41180 38632411
    17 9axf:Q (3.5) BS01 TCR ? GO:0004930 ... P41180 38632411
    18 9axf:R (3.5) BS01 TCR ? GO:0004930 ... P41180 38632411
    19 9ayf:Q (3.6) BS01 TCR ? GO:0004930 ... P41180 38632411
    20 9ayf:R (3.6) BS01 TCR ? GO:0004930 ... P41180 38632411
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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