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BioLiP
Download all results in tab-seperated text for 16 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 3ls4:H (2.0) BS01 TCI N/A N/A N/A 20630472 PDBbind: -logKd/Ki=6.30, IC50=500nM
    2 3ls4:L (2.0) BS01 TCI N/A N/A N/A 20630472 PDBbind: -logKd/Ki=6.30, IC50=500nM
    3 6mp4:A (2.502) BS01 TCI ? GO:0003682 ... P07148 31110286
    4 6mp4:E (2.502) BS01 TCI ? GO:0003682 ... P07148 31110286
    5 6mp4:H (2.502) BS01 TCI ? GO:0003682 ... P07148 31110286
    6 7m6o:A (2.84) BS01 TCI ? GO:0004888 ... O93430 35982060
    7 7m6o:B (2.84) BS02 TCI ? GO:0004888 ... O93430 35982060
    8 7m6o:C (2.84) BS02 TCI ? GO:0004888 ... O93430 35982060
    9 7m6o:D (2.84) BS02 TCI ? GO:0004888 ... O93430 35982060
    10 7m6o:E (2.84) BS03 TCI ? GO:0004888 ... O93430 35982060
    11 7m6q:A (2.91) BS02 TCI ? GO:0004888 ... O93430 35982060
    12 7m6q:B (2.91) BS03 TCI ? GO:0004888 ... O93430 35982060
    13 7m6q:C (2.91) BS03 TCI ? GO:0004888 ... O93430 35982060
    14 7m6q:D (2.91) BS03 TCI ? GO:0004888 ... O93430 35982060
    15 7m6q:E (2.91) BS03 TCI ? GO:0004888 ... O93430 35982060
    16 7p4j:A (1.79) BS03 TCI 3.1.4.39 GO:0001953 ... Q64610 36623871
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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