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BioLiP
Download all results in tab-seperated text for 84 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1dd4:A (2.4) BS01 TBR ? GO:0003729 ... P29396 10637222
    2 1dd4:A (2.4) BS02 TBR ? GO:0003729 ... P29396 10637222
    3 1dd4:B (2.4) BS01 TBR ? GO:0003729 ... P29396 10637222
    4 1hkx:A (2.65) BS01 TBR 2.7.11.17 GO:0004683 ... P11798 12769848
    5 1z7l:A (2.8) BS01 TBR 6.2.1.45 GO:0008641 ... Q02053 15774460
    6 1z7l:B (2.8) BS01 TBR 6.2.1.45 GO:0008641 ... Q02053 15774460
    7 1z7l:C (2.8) BS01 TBR 6.2.1.45 GO:0008641 ... Q02053 15774460
    8 2bvl:A (2.2) BS04 TBR 2.4.1.-
    3.4.22.-    		 GO:0016757 ... P18177 16054646
    9 2bvl:A (2.2) BS05 TBR 2.4.1.-
    3.4.22.-    		 GO:0016757 ... P18177 16054646
    10 2bvl:A (2.2) BS06 TBR 2.4.1.-
    3.4.22.-    		 GO:0016757 ... P18177 16054646
    11 2bvl:A (2.2) BS07 TBR 2.4.1.-
    3.4.22.-    		 GO:0016757 ... P18177 16054646
    12 3c0v:A (1.8) BS03 TBR ? GO:0004864 ... A0A1S3THR8 18453695
    13 3c0v:B (1.8) BS03 TBR ? GO:0004864 ... A0A1S3THR8 18453695
    14 3c0v:C (1.8) BS01 TBR ? GO:0004864 ... A0A1S3THR8 18453695
    15 3c0v:C (1.8) BS02 TBR ? GO:0004864 ... A0A1S3THR8 18453695
    16 3c0v:D (1.8) BS03 TBR ? GO:0004864 ... A0A1S3THR8 18453695
    17 3en9:A (2.67) BS02 TBR 2.3.1.234
    2.7.11.1    		 GO:0000408 ... Q58530 18951093
    18 3en9:B (2.67) BS02 TBR 2.3.1.234
    2.7.11.1    		 GO:0000408 ... Q58530 18951093
    19 3enh:A (3.6) BS01 TBR 2.3.1.234
    2.7.11.1    		 GO:0000408 ... Q58530 18951093
    20 3enh:A (3.6) BS02 TBR 2.3.1.234
    2.7.11.1    		 GO:0000408 ... Q58530 18951093
    21 3enh:B (3.6) BS01 TBR 2.3.1.234
    2.7.11.1    		 GO:0000408 ... Q58530 18951093
    22 3enh:B (3.6) BS02 TBR 2.3.1.234
    2.7.11.1    		 GO:0000408 ... Q58530 18951093
    23 3ott:A (2.3) BS01 TBR 2.7.13.3 N/A Q89YQ8 24995510
    24 3ott:B (2.3) BS01 TBR 2.7.13.3 N/A Q89YQ8 24995510
    25 3rwr:J (3.943) BS01 TBR ? GO:0003677 ... Q13426 N/A
    26 3rwr:M (3.943) BS01 TBR ? GO:0005634 ... Q9H9Q4 N/A
    27 3rwr:X (3.943) BS01 TBR ? GO:0005634 ... Q9H9Q4 N/A
    28 3rwr:Y (3.943) BS01 TBR ? GO:0003677 ... Q13426 N/A
    29 3rzs:A (1.88) BS01 TBR N/A GO:0005549 ... N/A 22075131
    30 4b09:A (3.3) BS01 TBR ? GO:0000156 ... P69229 23868292
    31 4b09:A (3.3) BS02 TBR ? GO:0000156 ... P69229 23868292
    32 4b09:B (3.3) BS01 TBR ? GO:0000156 ... P69229 23868292
    33 4b09:C (3.3) BS01 TBR ? GO:0000156 ... P69229 23868292
    34 4b09:D (3.3) BS01 TBR ? GO:0000156 ... P69229 23868292
    35 4b09:E (3.3) BS01 TBR ? GO:0000156 ... P69229 23868292
    36 4b09:F (3.3) BS01 TBR ? GO:0000156 ... P69229 23868292
    37 4b09:G (3.3) BS01 TBR ? GO:0000156 ... P69229 23868292
    38 4b09:I (3.3) BS01 TBR ? GO:0000156 ... P69229 23868292
    39 4b09:K (3.3) BS01 TBR ? GO:0000156 ... P69229 23868292
    40 4cv5:A (3.807) BS01 TBR ? GO:0017148 ... P25655 24768538
    41 4cv5:B (3.807) BS01 TBR ? GO:0006402 ... P53829 24768538
    42 4j9u:C (3.8) BS01 TBR ? GO:0005267 ... Q87TN7 23598339
    43 4j9u:D (3.8) BS01 TBR ? GO:0005267 ... Q87TN7 23598339
    44 4j9u:E (3.8) BS01 TBR ? GO:0000166 ... Q87KD2 23598339
    45 4j9u:E (3.8) BS03 TBR ? GO:0000166 ... Q87KD2 23598339
    46 4j9u:F (3.8) BS02 TBR ? GO:0000166 ... Q87KD2 23598339
    47 4j9u:F (3.8) BS03 TBR ? GO:0000166 ... Q87KD2 23598339
    48 4j9u:G (3.8) BS01 TBR ? GO:0000166 ... Q87KD2 23598339
    49 4j9u:G (3.8) BS03 TBR ? GO:0000166 ... Q87KD2 23598339
    50 4j9u:H (3.8) BS01 TBR ? GO:0000166 ... Q87KD2 23598339
    51 4j9u:H (3.8) BS03 TBR ? GO:0000166 ... Q87KD2 23598339
    52 4r6c:A (1.7) BS01 TBR 3.2.1.17 GO:0003796 ... P00698 25605312
    53 4r6c:A (1.7) BS02 TBR 3.2.1.17 GO:0003796 ... P00698 25605312
    54 4zc0:B (6.7) BS01 TBR 3.6.4.12 GO:0003677 ... O25916 26264665
    55 5eul:A (3.7) BS02 TBR 7.4.2.8 GO:0005524 ... P28366 26950603
    56 5eul:A (3.7) BS03 TBR 7.4.2.8 GO:0005524 ... P28366 26950603
    57 5eul:A (3.7) BS04 TBR 7.4.2.8 GO:0005524 ... P28366 26950603
    58 5eul:A (3.7) BS05 TBR 7.4.2.8 GO:0005524 ... P28366 26950603
    59 5eul:A (3.7) BS06 TBR 7.4.2.8 GO:0005524 ... P28366 26950603
    60 5eul:A (3.7) BS07 TBR 7.4.2.8 GO:0005524 ... P28366 26950603
    61 5eul:A (3.7) BS08 TBR 7.4.2.8 GO:0005524 ... P28366 26950603
    62 5eul:A (3.7) BS09 TBR 7.4.2.8 GO:0005524 ... P28366 26950603
    63 5eul:A (3.7) BS10 TBR 7.4.2.8 GO:0005524 ... P28366 26950603
    64 5eul:A (3.7) BS11 TBR 7.4.2.8 GO:0005524 ... P28366 26950603
    65 5eul:A (3.7) BS12 TBR 7.4.2.8 GO:0005524 ... P28366 26950603
    66 5eul:A (3.7) BS13 TBR 7.4.2.8 GO:0005524 ... P28366 26950603
    67 5eul:A (3.7) BS14 TBR 7.4.2.8 GO:0005524 ... P28366 26950603
    68 5eul:A (3.7) BS15 TBR 7.4.2.8 GO:0005524 ... P28366 26950603
    69 5eul:A (3.7) BS16 TBR 7.4.2.8 GO:0005524 ... P28366 26950603
    70 5eul:Y (3.7) BS01 TBR ? GO:0005048 ... A4IJK8 26950603
    71 5eul:Y (3.7) BS02 TBR ? GO:0005048 ... A4IJK8 26950603
    72 5eul:Y (3.7) BS03 TBR ? GO:0005048 ... A4IJK8 26950603
    73 5oar:D (2.3) BS01 TBR 3.2.1.52 GO:0004553 ... Q8J2T0 29239122
    74 6m97:A (3.03) BS01 TBR ? GO:0005375 ... C0HAK2
    P0ABE7    		 30918258
    75 6m97:A (3.03) BS02 TBR ? GO:0005375 ... C0HAK2
    P0ABE7    		 30918258
    76 6m9g:A (2.35) BS01 TBR ? GO:0004519 ... Q5D6Y4 30395313
    77 6m9g:A (2.35) BS02 TBR ? GO:0004519 ... Q5D6Y4 30395313
    78 6m9g:A (2.35) BS03 TBR ? GO:0004519 ... Q5D6Y4 30395313
    79 6m9g:B (2.35) BS01 TBR ? GO:0004519 ... Q5D6Y4 30395313
    80 6m9g:B (2.35) BS02 TBR ? GO:0004519 ... Q5D6Y4 30395313
    81 6m9g:B (2.35) BS03 TBR ? GO:0004519 ... Q5D6Y4 30395313
    82 6m9g:B (2.35) BS04 TBR ? GO:0004519 ... Q5D6Y4 30395313
    83 6tvk:AAA (2.1) BS01 TBR ? GO:0004565 ... K0JCW6 N/A
    84 7u1b:A (2.62) BS01 TBR ? N/A Q9A800 36516849
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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