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BioLiP
Download all results in tab-seperated text for 17 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1adf:A (2.9) BS03 TAD 1.1.1.1 GO:0004022 ... P00327 8286346
    2 1aer:A (2.3) BS01 TAD 2.4.2.36 GO:0047286 ... P11439 8692916
    3 1kr2:A (2.3) BS01 TAD 2.7.7.1
    2.7.7.18    		 GO:0000309 ... Q9HAN9 11788603
    4 1kr2:B (2.3) BS01 TAD 2.7.7.1
    2.7.7.18    		 GO:0000309 ... Q9HAN9 11788603
    5 1kr2:C (2.3) BS01 TAD 2.7.7.1
    2.7.7.18    		 GO:0000309 ... Q9HAN9 11788603
    6 1kr2:D (2.3) BS01 TAD 2.7.7.1
    2.7.7.18    		 GO:0000309 ... Q9HAN9 11788603
    7 1kr2:E (2.3) BS01 TAD 2.7.7.1
    2.7.7.18    		 GO:0000309 ... Q9HAN9 11788603
    8 1kr2:F (2.3) BS01 TAD 2.7.7.1
    2.7.7.18    		 GO:0000309 ... Q9HAN9 11788603
    9 1lrt:A (2.2) BS02 TAD 1.1.1.205 GO:0003824 ... P50097 12403633 MOAD: Ki=2.3uM
    PDBbind: -logKd/Ki=5.64, Ki=2.3uM
    10 1lrt:B (2.2) BS02 TAD 1.1.1.205 GO:0003824 ... P50097 12403633 MOAD: Ki=2.3uM
    PDBbind: -logKd/Ki=5.64, Ki=2.3uM
    11 1lrt:C (2.2) BS02 TAD 1.1.1.205 GO:0003824 ... P50097 12403633 MOAD: Ki=2.3uM
    12 1lrt:D (2.2) BS02 TAD 1.1.1.205 GO:0003824 ... P50097 12403633 MOAD: Ki=2.3uM
    13 1og1:A (2.0) BS01 TAD 2.4.2.31
    3.2.2.5    		 GO:0106274 ... P20974 12939142
    14 1zm4:B (2.9) BS01 TAD 2.4.2.36 GO:0047286 ... P11439 16107839
    15 1zm4:D (2.9) BS01 TAD 2.4.2.36 GO:0047286 ... P11439 16107839
    16 1zm4:F (2.9) BS01 TAD 2.4.2.36 GO:0047286 ... P11439 16107839
    17 3buz:A (2.81) BS01 TAD ? GO:0000166 ... Q46220 18490658
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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