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BioLiP
Download all results in tab-seperated text for 16 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1i97:D (4.5) BS02 TAC ? GO:0003723 ... P80373 11296217
    2 1i97:I (4.5) BS02 TAC ? GO:0000049 ... P80374 11296217
    3 2hcj:B (2.12) BS02 TAC ? GO:0003746 ... P0CE47 17057344
    4 2hdn:B (2.8) BS02 TAC ? GO:0003746 ... P0CE47 17057344
    5 2hdn:D (2.8) BS02 TAC ? GO:0003746 ... P0CE47 17057344
    6 2hdn:F (2.8) BS02 TAC ? GO:0003746 ... P0CE47 17057344
    7 2hdn:H (2.8) BS02 TAC ? GO:0003746 ... P0CE47 17057344
    8 2hdn:J (2.8) BS02 TAC ? GO:0003746 ... P0CE47 17057344
    9 2hdn:L (2.8) BS02 TAC ? GO:0003746 ... P0CE47 17057344
    10 2trt:A (2.5) BS01 TAC ? GO:0000976 ... P0ACT4 8153629
    11 2uxo:B (2.7) BS01 TAC ? GO:0000976 ... Q9AIU0 17466326
    12 2vke:A (1.62) BS01 TAC ? GO:0000976 ... P0ACT4 18548290
    13 3q5p:A (2.942) BS02 TAC ? GO:0003677 ... P39075 21690368
    14 4b3a:A (1.7) BS01 TAC ? GO:0000976 ... P0ACT4 32114262
    15 6fpl:A (1.602) BS01 TAC ? GO:0000976 ... P0ACT4 32114262
    16 6fpm:A (1.85) BS01 TAC ? GO:0000976 ... P0ACT4 32114262
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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