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BioLiP
Download all results in tab-seperated text for 21 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 3fsb:A (1.95) BS02 T3Q ? N/A Q6TFC6 19191736
    2 3fsb:B (1.95) BS02 T3Q ? N/A Q6TFC6 19191736
    3 3pfh:A (1.792) BS02 T3Q 2.1.1.235 GO:0008168 ... P95748 21142177
    4 3pfh:D (1.792) BS02 T3Q 2.1.1.235 GO:0008168 ... P95748 21142177
    5 3px2:A (1.65) BS02 T3Q 2.1.1.235 GO:0008168 ... P95748 21142177
    6 3px2:D (1.65) BS02 T3Q 2.1.1.235 GO:0008168 ... P95748 21142177
    7 3px3:A (1.8) BS02 T3Q 2.1.1.235 GO:0008168 ... P95748 21142177
    8 3px3:D (1.8) BS02 T3Q 2.1.1.235 GO:0008168 ... P95748 21142177
    9 4lxt:A (1.4) BS02 T3Q N/A GO:0009058 ... N/A 23898784
    10 4lxt:B (1.4) BS02 T3Q N/A GO:0009058 ... N/A 23898784
    11 4ly3:A (1.9) BS02 T3Q N/A GO:0009058 ... N/A 23898784
    12 4xcz:A (1.5) BS02 T3Q 2.1.2.9 GO:0003824 ... F8RC03 25574689
    13 4xcz:A (1.5) BS03 T3Q 2.1.2.9 GO:0003824 ... F8RC03 25574689
    14 4xd1:A (1.5) BS02 T3Q 2.1.2.9 GO:0003824 ... F8RC03 25574689
    15 5uim:A (2.2) BS01 T3Q ? GO:0003824 ... U3GK13 28263875
    16 5uim:A (2.2) BS02 T3Q ? GO:0003824 ... U3GK13 28263875
    17 5uim:B (2.2) BS02 T3Q ? GO:0003824 ... U3GK13 28263875
    18 7n7c:A (2.0) BS02 T3Q ? GO:0004479 ... C5ZW02 34379357
    19 7n7c:B (2.0) BS02 T3Q ? GO:0004479 ... C5ZW02 34379357
    20 7s3u:A (1.45) BS02 T3Q N/A GO:0016740 ... N/A 34651380
    21 7s43:A (1.7) BS01 T3Q N/A GO:0016740 ... N/A 34651380
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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